Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1453
         (820 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86P20 Cluster: RE18590p; n=8; Endopterygota|Rep: RE185...    45   0.002
UniRef50_Q8LMN4 Cluster: Retrotransposon protein, putative, Ty3-...    37   0.70 
UniRef50_UPI0000DB76A8 Cluster: PREDICTED: similar to CG14257-PA...    36   1.6  
UniRef50_Q9NZR2 Cluster: Low-density lipoprotein receptor-relate...    35   2.1  
UniRef50_P98164 Cluster: Low-density lipoprotein receptor-relate...    35   2.8  
UniRef50_A1L1T4 Cluster: Zgc:158328; n=4; Danio rerio|Rep: Zgc:1...    34   3.8  
UniRef50_UPI000023F453 Cluster: hypothetical protein FG03115.1; ...    34   5.0  
UniRef50_A3JHU7 Cluster: Putative uncharacterized protein; n=1; ...    34   5.0  
UniRef50_Q0DJJ4 Cluster: Os05g0272300 protein; n=1; Oryza sativa...    33   6.6  

>UniRef50_Q86P20 Cluster: RE18590p; n=8; Endopterygota|Rep: RE18590p -
            Drosophila melanogaster (Fruit fly)
          Length = 987

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 24/69 (34%), Positives = 37/69 (53%)
 Frame = +1

Query: 4    LCIPARLICNGVVNCPNITTSEKKFWTAEEKRAKEAYSEDSLRRLGYLDALAGLPLGKMN 183
            +CIP  L+CNG+ NCPN+T +     T  +      + E +L +LG L          ++
Sbjct: 877  VCIPKHLLCNGIANCPNVTHTS----TLSQ---LTRHIEWNLEQLGLLHHAGDYQQLVLH 929

Query: 184  DESPELCAR 210
            DESPE+C +
Sbjct: 930  DESPEICLK 938


>UniRef50_Q8LMN4 Cluster: Retrotransposon protein, putative,
           Ty3-gypsy sub-class; n=2; Oryza sativa (japonica
           cultivar-group)|Rep: Retrotransposon protein, putative,
           Ty3-gypsy sub-class - Oryza sativa subsp. japonica
           (Rice)
          Length = 674

 Score = 36.7 bits (81), Expect = 0.70
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +1

Query: 304 VFAAESGLLTKNLWITDMRPAAHPTRRRRSIRVPHPGTYQWTGASIDSRCTECLC 468
           V A  +GLL   LW +   P  H  RRR  I  P  G Y +T     +    CLC
Sbjct: 500 VSAYTAGLLCHRLWASTSSPTGHLVRRRLPIMPPMLGVYVFTDRLAFAAVDWCLC 554


>UniRef50_UPI0000DB76A8 Cluster: PREDICTED: similar to CG14257-PA;
           n=1; Apis mellifera|Rep: PREDICTED: similar to
           CG14257-PA - Apis mellifera
          Length = 1281

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 26/87 (29%), Positives = 40/87 (45%)
 Frame = +2

Query: 545 HHTRVNYPIAGNSAVASIYPIMLRATSCDKGAQ*CL*LRVYTHPI*PSLRYSVLQTDHRL 724
           H  + ++ +  NS + S Y +M++ +S D+          Y +PI P L  S     H  
Sbjct: 422 HFNQDDHKVNSNSPLPSSYDVMIQHSSNDQNG--------YDYPIYPPLAPSPPSNLHVS 473

Query: 725 ERGDNIQTLSSYISIRLIYNSISDFGN 805
              D+IQ    Y  I + Y+SI D GN
Sbjct: 474 PFTDSIQQSIEYPPIHIQYHSIPDEGN 500


>UniRef50_Q9NZR2 Cluster: Low-density lipoprotein receptor-related
            protein 1B precursor; n=65; Euteleostomi|Rep: Low-density
            lipoprotein receptor-related protein 1B precursor - Homo
            sapiens (Human)
          Length = 4599

 Score = 35.1 bits (77), Expect = 2.1
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +1

Query: 1    ALCIPARLICNGVVNCPNITTSEKKFWTAEEKRAKEAYSEDSLRRLGYLDALAGLPLGKM 180
            A CIP R +C+G+ +C + +  E         RA E    +SL +L +         G  
Sbjct: 3643 AHCIPIRWLCDGIHDCVDGSDEENCERGGNICRADEFLCNNSLCKLHFWVCDGEDDCGDN 3702

Query: 181  NDESPELCAR 210
            +DE+P++C +
Sbjct: 3703 SDEAPDMCVK 3712


>UniRef50_P98164 Cluster: Low-density lipoprotein receptor-related
            protein 2 precursor; n=49; Euteleostomi|Rep: Low-density
            lipoprotein receptor-related protein 2 precursor - Homo
            sapiens (Human)
          Length = 4655

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
 Frame = +1

Query: 7    CIPARLICNGVVNCPNITTSEKKFW---TAEEKRAKEAYSEDSLRRLGYLDALAGLPLGK 177
            CIP   ICNGV NC +  TS++K     T +    K   S   + R+   D       G 
Sbjct: 2793 CIPREFICNGVDNCHDNNTSDEKNCPDRTCQSGYTKCHNSNICIPRVYLCD--GDNDCGD 2850

Query: 178  MNDESPELCARARSTGSGEWTAPALGQDWPVFW 276
             +DE+P  C    +  S E+   A G+  P  W
Sbjct: 2851 NSDENPTYCT-THTCSSSEFQC-ASGRCIPQHW 2881


>UniRef50_A1L1T4 Cluster: Zgc:158328; n=4; Danio rerio|Rep: Zgc:158328
            - Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 1339

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 412  GTYQWTGASIDSRCTECLCPPLLTTERSKKKC*NEHVHYNC 534
            G     GAS D    +CLCPP  T ER +K C + +   +C
Sbjct: 1246 GVCDCDGASCDPTTGQCLCPPGKTGERCEKVCDSRYYGPDC 1286


>UniRef50_UPI000023F453 Cluster: hypothetical protein FG03115.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG03115.1 - Gibberella zeae PH-1
          Length = 712

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = +2

Query: 269 CFGYMCARSNLASLLPKAVS*RRIFGLL--TCGPRRTQRAAVAPFAFHIQGL--TNGLEP 436
           C  YMC RS++  L   A S +R+F L       R+T++ +  PFA +   L  TN +  
Sbjct: 558 CCAYMCTRSSMVYLALVAESIKRLFPLSRDDSNTRQTKQQSNTPFATNTTNLLDTNDISS 617

Query: 437 PLTAAVL-SACALRC*QLNA 493
            +  +VL +A AL    L+A
Sbjct: 618 TMKLSVLVAALALSSEALSA 637


>UniRef50_A3JHU7 Cluster: Putative uncharacterized protein; n=1;
           Marinobacter sp. ELB17|Rep: Putative uncharacterized
           protein - Marinobacter sp. ELB17
          Length = 241

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 405 WNANGATAARWVRRGPHVSNPKILRQETAFGSKDARLLLAHI*PKH 268
           W ANGA+A R + +  H  N   +RQ TA+  KD   L+  + P +
Sbjct: 82  WLANGASAKRGLNKAIHSVNMGQIRQFTAYKLKDRGKLMVRVKPHY 127


>UniRef50_Q0DJJ4 Cluster: Os05g0272300 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os05g0272300 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 227

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = -2

Query: 456 STAAVNGGSSPLVSPWMWNANGATAARWVRRGP 358
           S AA +GGSSP  S W   A  A A RW R GP
Sbjct: 101 SAAAASGGSSPPSSAWTRGA--APAPRWSRSGP 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 819,030,085
Number of Sequences: 1657284
Number of extensions: 17529812
Number of successful extensions: 48118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48099
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)