Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1453
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.16 |mug134||endosulphine family protein|Schizosaccharom...    31   0.20 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    28   1.8  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   5.6  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.8  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.8  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   9.8  

>SPAC10F6.16 |mug134||endosulphine family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +3

Query: 207 QGEKYRKWRVDCSCSRAGLASVLAICALGATWRLCCRKRSPDEESLDY*HAARGAPNAPP 386
           QG KY     D + ++AG AS   I  +G        K  P  +++ +   + G+PN  P
Sbjct: 57  QGRKYFD-SGDYALNKAGKASDSGITCIG--------KEIPSPDTIPHRVVSAGSPNKEP 107

Query: 387 SLHSRSTSRDLP 422
           SLH++  S   P
Sbjct: 108 SLHTKRPSESSP 119


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 371 TQRAAVAPFAFHIQGLTNGLEPPLTAAVLSACAL 472
           T + +V PF F IQ     LEPPL++  L++  L
Sbjct: 326 TSQNSVQPFPFSIQQPPLHLEPPLSSNTLNSSTL 359


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +1

Query: 58   TTSEKKFWTAEEKRAKEAYSEDSLRRLGYLDALAGLPLGKMNDESPEL--CARARSTGSG 231
            T +  K  TA   +A   Y+ D+L     + A    P  K  +++  L   ARA  + +G
Sbjct: 1628 TYNAYKAKTAARYKASYRYTHDALVYNNLVRAKDSPPYTKEQEKAVYLNPLARASKSKAG 1687

Query: 232  EWTAPA 249
             WT PA
Sbjct: 1688 TWTFPA 1693


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 412 GTYQWTGASIDSRCTECLCPPLLTTE-RSKKKC*NEHVHYNCLD 540
           G + ++G   D RC  CL    L  E R  K+C N   H  C+D
Sbjct: 514 GVFPFSGT--DERCLVCLSNFELNDECRRLKQC-NHFFHRECID 554


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 426 PLVSPWMWNANGATAARWVRRGPHV 352
           P+ S + W+ NGAT  +W  + PH+
Sbjct: 358 PVNSFYDWH-NGATQVKWNYKNPHI 381


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 23/71 (32%), Positives = 31/71 (43%)
 Frame = -3

Query: 272 NTGQSCPRAGAVHSPLPVLLALAHNSGDSSFIFPKGSPARASR*PNLLKLSSEYASLARF 93
           NT QS   AGA+ S L  +LAL   S   S I  K   AR      +    S Y +  ++
Sbjct: 145 NTWQSYVTAGAIGSDLIAILALCLRSVSISRIGQKS--ARLEHVDTMNSSYSSYKTDVKY 202

Query: 92  SSAVQNFFSDV 60
             A+ +  S V
Sbjct: 203 PLALDDKLSSV 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,282
Number of Sequences: 5004
Number of extensions: 69456
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)