Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1453
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0907 - 24210889-24211149,24211264-24211332,24212124-24212222 30 1.9
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 29 3.4
01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448 29 3.4
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 29 4.4
05_01_0114 + 770049-770286,771007-771605 29 4.4
04_04_1016 - 30139691-30139951,30140066-30140134,30141267-301414... 29 5.9
04_04_1009 - 30078988-30079248,30079363-30079431,30080564-300807... 29 5.9
09_02_0258 - 6380702-6380758,6380767-6380794,6381352-6381467,638... 28 7.8
07_03_0501 - 18820554-18821548,18821960-18822182 28 7.8
05_04_0031 + 17353292-17354353 28 7.8
02_01_0292 + 1949926-1950037,1950121-1950250,1950551-1950616,195... 28 7.8
>12_02_0907 - 24210889-24211149,24211264-24211332,24212124-24212222
Length = 142
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 447 AVNGGSSPLVSPWMWNANGATAARWVRRG 361
A++ SS SPW ++ ATAA W+ G
Sbjct: 79 AISSSSSSSASPWTGSSAAATAASWLESG 107
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -3
Query: 323 PLSAAKTPGCS*RTYSQNTGQSCPRAGAVHSPLPVLLALAHNSGDSSFIFPKGSPARA 150
PLSAAKTP CS + S ++ P A A + + A S + P+ +PA A
Sbjct: 14 PLSAAKTPSCSCQANSSSSALRPPGARADSVSVSPVHARGGESAAAMDSRPREAPAPA 71
>01_01_0857 - 6693460-6693991,6695086-6695165,6695508-6697448
Length = 850
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +2
Query: 380 AAVAPFAFHIQGLTNGLEPPLTAAVLSACALR 475
AA AP +FH+ G T PL L ACA R
Sbjct: 82 AAPAPLSFHLHGETLASLAPLRRLALPACAHR 113
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -1
Query: 439 WRLQSIGKSLDVEREWSDGGALGAPRAACQ*SKDSSSGDRFRQQRRQVAPSAHIAKT 269
WRL+S + + +++DGG+ + R A +KD+ + APS H T
Sbjct: 2310 WRLKSFANKIP-QLDFADGGSSYSNRTAANNTKDAPKECNKEAKAYMFAPSGHTPAT 2365
>05_01_0114 + 770049-770286,771007-771605
Length = 278
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/70 (30%), Positives = 26/70 (37%)
Frame = +1
Query: 208 RARSTGSGEWTAPALGQDWPVFWLYVR*EQPGVFAAESGLLTKNLWITDMRPAAHPTRRR 387
R R T E L W W + PG E KN W T MR AH +++
Sbjct: 102 RGRITADEERLILHLHSQWGSRWSRIARSLPGRTDNE----IKNFWRTHMRKIAHHAKKK 157
Query: 388 RSIRVPHPGT 417
+ P P T
Sbjct: 158 TNSPSPAPTT 167
>04_04_1016 -
30139691-30139951,30140066-30140134,30141267-30141470,
30141552-30141808,30141899-30141983,30142080-30142164,
30142269-30142795
Length = 495
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 447 AVNGGSSPLVSPWMWNANGATAARWVRRG 361
A++ SS SPW ++ ATAA W G
Sbjct: 432 AISSSSSSSASPWTGSSAAATAASWRESG 460
>04_04_1009 -
30078988-30079248,30079363-30079431,30080564-30080767,
30080849-30081105,30081196-30081280,30081377-30081461,
30081566-30082092
Length = 495
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 447 AVNGGSSPLVSPWMWNANGATAARWVRRG 361
A++ SS SPW ++ ATAA W G
Sbjct: 432 AISSSSSSSASPWTGSSAAATAASWRESG 460
>09_02_0258 -
6380702-6380758,6380767-6380794,6381352-6381467,
6382318-6382435,6382542-6382721,6383214-6383313,
6384315-6384618
Length = 300
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 591 HPSTRLC*GQQVVIKALNNVCNYVY 665
HPS +L GQ +V+K ++CN +
Sbjct: 260 HPSKKLACGQMLVVKFAKSLCNMAF 284
>07_03_0501 - 18820554-18821548,18821960-18822182
Length = 405
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = +1
Query: 67 EKKFWTAEEKRAKEAYSEDSLRRLGYLDALAGLPLGKMNDESPELCARARSTGSGEWTAP 246
EK+F + EA+ E + R L LDA + ++ PEL A A + EW P
Sbjct: 81 EKRFMFVNDD-VMEAHPEFADRHLTSLDARVEI----VSKVVPELAAAASAKAIAEWGRP 135
Query: 247 ALGQDWPVFWLYVR*EQPG 303
A +F Y + PG
Sbjct: 136 ATDITHLIFSTYSGVKAPG 154
>05_04_0031 + 17353292-17354353
Length = 353
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 324 SPDEESLDY*HAARGAPNAPPSLHSRSTSRDLPMDWSLH 440
SP SLD+ A AP PP S S+S WSL+
Sbjct: 138 SPSSSSLDHASTATSAPAPPPD--SSSSSAAAATTWSLY 174
>02_01_0292 +
1949926-1950037,1950121-1950250,1950551-1950616,
1950718-1950789,1951198-1951607,1951789-1951994,
1952121-1952407,1952527-1952665,1952746-1953141
Length = 605
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 260 SCPRAGAVHSPLPVLLALAHNS--GDSSFIFPKGSPARAS 147
+ PR+GA H P+ V+ A H + GD K SPA+A+
Sbjct: 160 AAPRSGASHPPIYVIPATPHGAAQGDPPRHGKKVSPAKAA 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,497,036
Number of Sequences: 37544
Number of extensions: 514704
Number of successful extensions: 1471
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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