Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1453
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.6  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   5.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 381 PPSLHSRSTSRDLPMD 428
           PPS   +STS DLP D
Sbjct: 343 PPSETEQSTSMDLPSD 358


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 381 PPSLHSRSTSRDLPMD 428
           PPS   +STS DLP D
Sbjct: 343 PPSETEQSTSMDLPSD 358


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 436 SIDSRCTECLCPPLLTTERSKKKC*NEHVHYN 531
           S+    TE L     T ER+  KC    VHY+
Sbjct: 342 SVSYPSTETLNTKCNTLERTPSKCSQTSVHYS 373


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 541 NLNNYNARVRFNIFFL 494
           N NNYN ++ +NI ++
Sbjct: 100 NYNNYNKKLYYNINYI 115


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 369 APNAPPSLHSRSTSRDLPMDWSLH*QPLY*VPVPSVVDN 485
           A N P + +S++  R +P+   L   P+Y VPVP V D+
Sbjct: 770 AQNVPQNTNSQAIPR-IPI---LPMIPVYCVPVPQVNDS 804


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 294 ATWRLCCRKRSPDEESLD 347
           A WRL CRK      +LD
Sbjct: 369 AFWRLTCRKCFKSRTNLD 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,165
Number of Sequences: 438
Number of extensions: 5324
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)