Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1453
         (820 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot...    30   2.1  
At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein / ...    29   3.7  
At2g29680.2 68415.m03608 cell division control protein CDC6, put...    29   3.7  
At2g29680.1 68415.m03607 cell division control protein CDC6, put...    29   3.7  
At3g15830.1 68416.m02003 phosphatidic acid phosphatase-related /...    29   4.9  
At2g46060.1 68415.m05729 transmembrane protein-related contains ...    28   6.5  
At2g03480.1 68415.m00307 dehydration-responsive protein-related ...    28   8.6  

>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 386

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -2

Query: 489 FSCQQRRAQALSTAAVNGGSSPLVSPWMWNANGATAARWVRRGPHVSNPKILRQ 328
           +S +   AQ  +T+  N G   +      N+ G +A +   +G HVS+P ++RQ
Sbjct: 61  YSTKDGAAQT-NTSKSNSGGKKIAISQPNNSKGNSAGKEKSKGKHVSSPDLMRQ 113


>At4g08160.1 68417.m01347 glycosyl hydrolase family 10 protein /
           carbohydrate-binding domain-containing protein  ;
           contains Pfam profiles PF00331: Glycosyl hydrolase
           family 10, PF02018: Carbohydrate binding domain
          Length = 752

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 499 FLSVQLSTTEGTGTQYSGCQWRLQSIGKSLDVEREWSDGG 380
           FL+ Q+S     G   SG     Q++  +L V+ +W +GG
Sbjct: 272 FLTYQISAWVKLGVGVSGSSMSPQNVNIALSVDNQWVNGG 311


>At2g29680.2 68415.m03608 cell division control protein CDC6,
           putative almost identical to DNA replication protein
           CDC6 GI:18056480 from [Arabidopsis thaliana];  identical
           to cDNA CDC6 protein (2g29680 gene) GI:18056479
          Length = 508

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 109 AYSEDSLRRLGYLDALAGLPLGKMNDESPELCARARSTGSGE 234
           AYS+D + R+   + L  LP       + E+CAR  S  SG+
Sbjct: 309 AYSKDQILRI-LQERLVALPFVAFQSNALEICARKVSAASGD 349


>At2g29680.1 68415.m03607 cell division control protein CDC6,
           putative almost identical to DNA replication protein
           CDC6 GI:18056480 from [Arabidopsis thaliana];  identical
           to cDNA CDC6 protein (2g29680 gene) GI:18056479
          Length = 539

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 109 AYSEDSLRRLGYLDALAGLPLGKMNDESPELCARARSTGSGE 234
           AYS+D + R+   + L  LP       + E+CAR  S  SG+
Sbjct: 340 AYSKDQILRI-LQERLVALPFVAFQSNALEICARKVSAASGD 380


>At3g15830.1 68416.m02003 phosphatidic acid phosphatase-related /
           PAP2-related contains Pfam profile PF01569: PAP2
           superfamily
          Length = 296

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +1

Query: 169 LGKMNDESPELCARARSTGSGEWTAPALGQDWPVF-WLYVR*EQ--PGVFAAESGLLTKN 339
           +G +N +  ++  +    G GEWT+ A    W +   +YV      P +FAA     T  
Sbjct: 40  IGPINSQMEDIAQKTDDGGGGEWTSKASFMTWTMHDIIYVARHHWIPCLFAAGVMFFTVV 99

Query: 340 LWITDMRPAA 369
            +   M PA+
Sbjct: 100 EYTFQMTPAS 109


>At2g46060.1 68415.m05729 transmembrane protein-related contains
           weak similarity to Swiss-Prot:Q9HCN3 transmembrane
           protein 8 precursor (M83 protein) [Homo sapiens]
          Length = 807

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 280 IAKTLASPALEQEQSTLHFLYFSPWHTTLEIRRSFFL 170
           +A T+A+ + + E S+ ++++ S WH T+     FFL
Sbjct: 740 VAFTMAAISFKVETSSSYWMWHSIWHFTIYTSSFFFL 776


>At2g03480.1 68415.m00307 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase;
           non-consensus GA donor site at exon 4
          Length = 606

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 486 SCQQRRAQALSTAAVNGGSSPLVSPWMWNANGATAARWV 370
           SC   R+QA      +G S P   P +   +G T+ RW+
Sbjct: 367 SCYSSRSQASIPLCKDGDSVPYYHPLVPCISGTTSKRWI 405


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,522,016
Number of Sequences: 28952
Number of extensions: 380637
Number of successful extensions: 938
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)