Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1452X
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 28 0.92
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 1.2
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 25 4.9
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 4.9
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 8.6
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 8.6
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 8.6
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 25 8.6
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 8.6
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.6
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 8.6
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 27.9 bits (59), Expect = 0.92
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 173 LQRRGV-QLPRVPGQRPPSRPDGAREQGLENEQLDYDSLIDGNP--SPSLRDQEY 328
L + GV +P P S D E +NE LD++S I +P P Q Y
Sbjct: 111 LHKTGVFSVPLQPTHTVNSNSDDGYENSSKNEYLDFNSEISASPVNEPMTHSQSY 165
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 1.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 106 IEPWGIKPMAATVFIAKSSMAYRPITKVMPD 14
+ PWG + + AT+ I +S I V PD
Sbjct: 166 LSPWGTERLTATINILRSDKTAEEIRSVPPD 196
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 27 FVMGRYAMLLLAINTVAAMGFIPHGSIGAEDHL 125
F+ R +L+ AI+T +GFI +GSI +H+
Sbjct: 348 FLKNRGIVLIAAISTTM-IGFIVYGSIDIMNHI 379
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 341 SLWGHQYVTRGAGEGEQ 391
SLWGH+YV A E E+
Sbjct: 155 SLWGHEYVRHLASEIEE 171
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 24.6 bits (51), Expect = 8.6
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 260 NEQLDYDSLIDGN--PSPSLRDQEYLQHSSLWGHQYVTRGAGEGEQRLRPSGVVP 418
NE D+ +++ + P P + EYL S H V + G R+R SG +P
Sbjct: 734 NEDFDWGVVVNVSKRPLPKGQSNEYLPQESYIVHTLVMVASDTGPLRIR-SGHLP 787
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 441 TLFCPRIVTRPIHAPSDTRKTR 506
T+ CP + PIH P+ + T+
Sbjct: 45 TILCPNMYKNPIHEPNGKKFTQ 66
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 225 DGGRWPGTLGSWTPRR*SLCPYARLLHEAKF 133
+GGRWP G PR C Y L H K+
Sbjct: 242 NGGRWPTIWGEDKPR----CLYTSLYHIFKW 268
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = -1
Query: 100 PWGIKPMAATVFIAKSSMAYRPITKVMPD 14
PW +K KS+ Y+PI PD
Sbjct: 498 PWTLKHKGGDAKATKSASKYKPINYPKPD 526
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 138 LLREVVERMGKDFNDAASSYLEFPASDRH 224
L+R VVE + +++ND YL H
Sbjct: 279 LIRHVVEEVSEEYNDKTVVYLNLLCDSFH 307
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 487 DGAWIGRVTIRGQNSVSFHHL 425
+GA +G++ RG + FHHL
Sbjct: 969 EGAGVGKLLNRGDSERLFHHL 989
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 24.6 bits (51), Expect = 8.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 230 PDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQ 334
PD +QG LD D++ID P S R +++
Sbjct: 1022 PDNNADQGWVYGDLDNDTIIDRVPPGSSRISNFIR 1056
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,216
Number of Sequences: 5004
Number of extensions: 40634
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -