Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1452X
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical pr...    79   2e-15
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.    28   3.4  
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    28   4.5  
U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical p...    27   7.8  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z92838-2|CAB07408.1|  211|Caenorhabditis elegans Hypothetical
           protein T03D8.3 protein.
          Length = 211

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 35/65 (53%), Positives = 44/65 (67%)
 Frame = +2

Query: 314 RDQEYLQHSSLWGHQYVTRGAGEGEQRLRPSGVVPNRQMVKTDAVLPAYCNPPNPCPVGY 493
           RD E L   S +G ++++ GAGEGEQ+L        RQ VK D VLPAYC PPNPCPVG+
Sbjct: 41  RDSENLPDLSSFGVKHISGGAGEGEQKLLEEDNFQERQEVKVDNVLPAYCEPPNPCPVGF 100

Query: 494 TEDQG 508
           T++ G
Sbjct: 101 TKEHG 105


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
 Frame = +2

Query: 179 RRGVQLPRVPGQRPPSRPDGAR-------EQGLENEQLDYDSLIDGNPSPSLRDQEYLQH 337
           +R  Q+P  P +RP S P G R       + G  +   + D   D +   + +     + 
Sbjct: 219 KRETQIPNYPRRRPDSDPPGGRVTSPSDVQSGASSHTRESDETPDISADGAKKLDNITEE 278

Query: 338 SSLWGHQYVT--RGAGEGEQRLRPSGVVPNRQMVKTDAVLPAYCN 466
           S     + ++      EG +R RP   V  + + ++D   P+ C+
Sbjct: 279 SGTPEEELMSGRDSEDEGLRRKRPKLQVEGKDVKRSDCYSPSECS 323


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
 Frame = +2

Query: 209  GQRPPSRPDGAR-EQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTRGAGEG 385
            G  PPS  DG    + +   Q +       NP  +    E+    SL   +Y   G+   
Sbjct: 999  GALPPSVTDGCPPNEYVYLVQGEIAQCDPFNPPNAPCPSEFTCQWSLSNQRYQCCGSNPA 1058

Query: 386  EQRLRPSGVVPNRQMVKTDAVLPAYCNP-PNPCPVGY 493
                RPS   PN Q+   DA     C+     CP GY
Sbjct: 1059 PTPQRPSDGCPNAQIAFRDADAVRVCSAGAANCPAGY 1095


>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 212 QRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTRGAGEGEQ 391
           +R P  P  +  +GLENEQ D D+LI        RD    +  +      + RG  +  +
Sbjct: 235 RRTPIMPSISFSEGLENEQFD-DALIHSPRLAPSRDTPVFRPQNYVEKAAINRGWLDSSR 293

Query: 392 RLRPSGV 412
            L   G+
Sbjct: 294 SLMEQGI 300


>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 200 RVPGQRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQ 322
           RV   +  +RP   + Q   +   + DS ++ +PSPSL DQ
Sbjct: 264 RVTFNQQATRPIDIKIQQYNDSDSELDSSVNSSPSPSLVDQ 304


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 212 QRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTRGAGEGEQ 391
           +R P  P  +  +GLENEQ D D+LI        RD    +  +      + RG  +  +
Sbjct: 235 RRTPIMPSISFSEGLENEQFD-DALIHSPRLAPSRDTPVFRPQNYVEKAAINRGWLDSSR 293

Query: 392 RLRPSGV 412
            L   G+
Sbjct: 294 SLMEQGI 300


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 22/104 (21%), Positives = 41/104 (39%)
 Frame = +2

Query: 176 QRRGVQLPRVPGQRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGH 355
           +RR  Q P+VP   P +    A+E+  +  + +Y    +   +   R++  ++ S     
Sbjct: 92  KRRREQAPKVP--EPTADEIEAKEEEYKKNKSEYYKRRNEVKTEEARERRRVRDSETDAW 149

Query: 356 QYVTRGAGEGEQRLRPSGVVPNRQMVKTDAVLPAYCNPPNPCPV 487
           +   R AG+     R     P      T    P+  + P P P+
Sbjct: 150 KKAIRDAGQSPDPKRAPRYSPPPSSTPTPTPPPSSSSSPTPTPL 193


>U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical
           protein F08F8.1 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
 Frame = -3

Query: 503 GLPCIRRGMDWAGYNTRAEQRQFSPFVG*GPRPM-----VGDAAHPRQHRVLRTDGPTTN 339
           G P  RRGMD  G+N       F  F G G          G     RQH   R  G  T 
Sbjct: 150 GRPFGRRGMDHHGFNFHRHHHPFGAFHGFGGHHHGFGHGFGHHGFKRQHPFERRFGRLTF 209

Query: 338 C 336
           C
Sbjct: 210 C 210


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 297  TPAPACATKSTCSTVRCGAIST 362
            TPA    T S CSTV C +++T
Sbjct: 2016 TPAKTSETTSLCSTVTCHSLAT 2037


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,833,565
Number of Sequences: 27780
Number of extensions: 245969
Number of successful extensions: 748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)