Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1452X
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   0.79 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.3  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 18/76 (23%), Positives = 33/76 (43%)
 Frame = +2

Query: 209 GQRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTRGAGEGE 388
           G+R   R D   + G  +  + ++ +++ N SPS   +     SS        +GA    
Sbjct: 480 GERQNGRKDSGYD-GAASTAVIHEPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAG 538

Query: 389 QRLRPSGVVPNRQMVK 436
           Q  + +G   N+Q +K
Sbjct: 539 QPSKRNGGETNKQELK 554


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 72  VAAMGFIPHGSIGAEDHLITETLLREVVERMGKDFNDAASSYL 200
           V  M  I  GS   +   + E +  E  E+ GK+++ A  +YL
Sbjct: 510 VKTMKTIKKGSFVTQ--YVGEVITNEEAEKRGKEYDAAGRTYL 550


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 407 PMVGDAAHPRQHRVLRTDGPTTNCAA 330
           P+V   +HP+    L    P+  CAA
Sbjct: 328 PIVYGISHPKYRAALFAKFPSLACAA 353


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -2

Query: 498 SVY-PTGHGLGGLQYAGR 448
           S+Y P   GL GL++AGR
Sbjct: 309 SLYQPHLRGLNGLEFAGR 326


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 469 RVTIRGQNSVSFHHLSVRDH 410
           R  +  + SV FHH + R H
Sbjct: 109 RPELTNRKSVVFHHDNARPH 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,785
Number of Sequences: 438
Number of extensions: 3272
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)