Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1452X
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19090.1 68418.m02269 heavy-metal-associated domain-containin...    31   0.45 
At4g22900.1 68417.m03308 expressed protein                             30   1.0  
At2g37800.1 68415.m04641 DC1 domain-containing protein contains ...    29   2.4  
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si...    28   4.2  
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains...    27   7.3  
At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    27   7.3  
At3g55560.1 68416.m06169 DNA-binding protein-related contains Pf...    27   7.3  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    27   9.6  

>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 587

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 2/102 (1%)
 Frame = +2

Query: 191 QLPRVPGQRPP--SRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYV 364
           Q+P  P Q+    + PD   E+   +E  D     D      L D E+  H         
Sbjct: 200 QMPNNPNQKAVKFNVPDDDDEEDFSDEFDDEFDEDDDEFDDDLEDDEFDDHPPPPNKMKP 259

Query: 365 TRGAGEGEQRLRPSGVVPNRQMVKTDAVLPAYCNPPNPCPVG 490
             G G     + P+ ++PN  M     +L A+ N   P P G
Sbjct: 260 MMGGGN---MIMPNNMMPNMMMPNAQQMLNAHKNGGGPGPAG 298


>At4g22900.1 68417.m03308 expressed protein 
          Length = 343

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 504 WSSVYPTGHGLGGLQYAGRTASVFTICRLGTTPDGRRR 391
           WSS+Y TG+ L G  Y    + V  +      PDG  R
Sbjct: 112 WSSIYSTGYNLSGYNYK-LVSPVLGLLAYNANPDGVAR 148


>At2g37800.1 68415.m04641 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 396

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = +2

Query: 293 GNPSPSLRDQEYLQHSSLWGHQYVTRGAGEG---EQRLRPSGVVPNRQM--VKTDAVLPA 457
           G+P P     EY  H + + H Y  +G   G   + +++  G    R+M  +  D  +  
Sbjct: 320 GSPQPQFYHSEYYYHHAYYNHGYTNQGQVHGYANQGQVQEPGRSKGRKMFSILMDLTVGV 379

Query: 458 YCN 466
            CN
Sbjct: 380 VCN 382


>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
           similar to SP|O94761 ATP-dependent DNA helicase Q4
           (RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 911

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 57  LAINTVAAMGFIPHGSIGAEDHLITETLLREVVERMGKDFNDAASSYLE-FPASDRHLAL 233
           + + TVA    +  G +GA  H      + E V+ +G+   D   SY   F  +D +L L
Sbjct: 539 VVVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLKL 598

Query: 234 MAHASKD 254
            + A  D
Sbjct: 599 RSLAHSD 605


>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 726

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +3

Query: 78  AMGFIPHGSIGAEDHLITETLLREVVERMGKDFNDAASSYLEFP 209
           ++G   +GSI AED L  E + +E+V ++  D  +++ ++ EFP
Sbjct: 26  SLGKWANGSISAEDGLTGEKIEQELVRQI-VDGRESSVTFDEFP 68


>At4g15410.1 68417.m02355 UBX domain-containing protein low
           similarity to XY40 protein [Rattus norvegicus]
           GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +2

Query: 197 PRVPGQRPPSRPDGAREQGLENEQLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTRG- 373
           P   G  PPS      +   ++   DY    + +PSPS R +     S    +   +RG 
Sbjct: 53  PNPTGPPPPSSTIAGAQSPSQSHSPDYTPS-ETSPSPS-RSRSASPSSRAAPYGLRSRGG 110

Query: 374 AGEGEQRLRPSGVVPNR 424
           AGE ++   PSG+  +R
Sbjct: 111 AGENKETENPSGIRSSR 127


>At3g55560.1 68416.m06169 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 310

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 266 QLDYDSLIDGNPSPSLRDQEYLQHSSLWGHQYVTRGAGEGEQRLRPSGVVP 418
           +LD+D   + + SP+ + Q   + +S      V  G+G G    RP G  P
Sbjct: 45  RLDHDFTTNNSGSPNTQTQSQEEQNSRDEQPAVEPGSGSGSTGRRPRGRPP 95


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (ATHIM)
            identical to SP|P34881 DNA (cytosine-5)-methyltransferase
            AthI (EC 2.1.1.37) {Arabidopsis thaliana}
          Length = 1534

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 473  WAGYNTRAEQRQFSPFVG*GPRPM--VGDAAHPRQHRVL 363
            W G   R + +   P     P+PM  VG   HP QHR+L
Sbjct: 1438 WKGLYGRLDWQGNFPTSVTDPQPMGKVGMCFHPEQHRIL 1476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,447,422
Number of Sequences: 28952
Number of extensions: 238204
Number of successful extensions: 687
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)