Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1451
         (764 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    29   0.054
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    29   0.054
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.7  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   4.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   6.2  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 377 PGPCSRAPSGRDG--GRWPGTLGSWTPRR-*SLCPYARLLHEAKFR 249
           PGP S+AP+ +       P  +G W PRR  S  P AR   +A  R
Sbjct: 95  PGPLSQAPASQQSLDASDPDAMGKWCPRREWSSPPDARAASDAARR 140


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -1

Query: 377 PGPCSRAPSGRDG--GRWPGTLGSWTPRR-*SLCPYARLLHEAKFR 249
           PGP S+AP+ +       P  +G W PRR  S  P AR   +A  R
Sbjct: 251 PGPLSQAPASQQSLDASDPDAMGKWCPRREWSSPPDARAASDAARR 296


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 543 SVRDHARWSETLSPSPAPP 487
           S+R   R+ E L+P P PP
Sbjct: 19  SLRKKGRFWECLAPIPQPP 37


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 543 SVRDHARWSETLSPSPAPP 487
           S+R   R+ E L+P P PP
Sbjct: 19  SLRKKGRFWECLAPIPQPP 37


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 685 RCMCDGEHMFSCPSDSTSDID 747
           RC   G    +CPS    DID
Sbjct: 56  RCTKSGLKQITCPSGLAFDID 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,085
Number of Sequences: 336
Number of extensions: 4093
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)