Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1451
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    31   0.18 
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    28   1.3  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   2.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.9  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.9  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   5.1  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   5.1  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.8  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   9.0  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 268 FTKQSSVIK*SFAPIEPWGIKPMAATVFIAKSSMAYRPITKVKPDQ 131
           F  + SV   + + + PWG + + AT+ I +S      I  V PDQ
Sbjct: 152 FRIEESVQPDTMSCLSPWGTERLTATINILRSDKTAEEIRSVPPDQ 197


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 248 NGTLLREVVERMGKDFNDAASSYLEFPASD 337
           NGTL+ + VE  G+D  D AS +   P++D
Sbjct: 236 NGTLVEDPVEEFGED--DIASDFFSSPSAD 263


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 220 PWGIKPMAATVFIAKSSMAYRPITKVKPD 134
           PW +K         KS+  Y+PI   KPD
Sbjct: 498 PWTLKHKGGDAKATKSASKYKPINYPKPD 526


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 205 PMAATVFIAKSSMAYRPITKVKPDQTRYDNDER 107
           P  A  FI +   +Y  I + +PD+  YD+ ER
Sbjct: 47  PSFANPFIHEQDDSYSDILEEEPDEDAYDSPER 79


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 448 LAAQFVVGPSVRNRRCWRG*ERLRPSGVVPNRQM 549
           L  QF++  S R    WR  + LR +GVV N ++
Sbjct: 433 LLMQFILAKSNRWSEVWRRWDNLRKAGVVFNERL 466


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 416 NPSPSLRDQEYLQHSSLWGHQYVTGGAGEGESVSDHRAWSLTD 544
           NP P LR +E+L       H  + G   E   + D  A   TD
Sbjct: 348 NPQPFLRTREFLWQEGHTAHMTLEGATEEVHQILDLYARIYTD 390


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 707 CSPSHMQR*DSWYSRLKAAVFSNSLMHPWSSVYPTGHGLGG 585
           C    +Q    +YS      +S   ++P + ++ TGH LGG
Sbjct: 246 CLEDEVQDDSRYYSASLDIFYSVKELYPDAQIWLTGHSLGG 286


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 147 FVMGRYAMLLLAINTVAAMGFIPHGSIGAKDHL 245
           F+  R  +L+ AI+T   +GFI +GSI   +H+
Sbjct: 348 FLKNRGIVLIAAISTTM-IGFIVYGSIDIMNHI 379


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 280 YGQRLQRRGVQLPRVPGQRPPSRPDGAREQGPGERAARL 396
           +G+RL+R G  L     ++PP    G++  G  ER  R+
Sbjct: 68  HGRRLERGGGVLRVEWAKQPPPSGPGSKRGGRRERGGRV 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,110
Number of Sequences: 5004
Number of extensions: 65948
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)