Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1451
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0272 - 16278136-16278289,16278873-16278970,16279090-162792...    30   2.3  
07_03_0408 - 17798033-17798181,17798349-17798616,17798707-177987...    29   4.1  
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478...    29   5.4  
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793           28   7.1  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    28   7.1  
03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807     28   7.1  
02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149     28   7.1  
05_04_0454 + 21383068-21384525                                         28   9.4  
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249...    28   9.4  

>09_04_0272 -
           16278136-16278289,16278873-16278970,16279090-16279230,
           16279701-16279865,16279941-16280117,16280330-16280510,
           16280784-16280829,16281178-16281241,16281331-16281353,
           16281964-16282036,16282410-16282541,16283343-16283429,
           16283488-16283700
          Length = 517

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +2

Query: 191 RRSHGLYPPWFYWGKGSFNNGTLLREVVERMGKDFNDAASSYLEFPASDR 340
           RRS    PPW +WG  +       RE  E M   + DAA +++  PA  R
Sbjct: 58  RRSIWFGPPWHFWGVIAEVVEASAREYEEGMRACY-DAAKTWMAIPAPKR 106


>07_03_0408 -
           17798033-17798181,17798349-17798616,17798707-17798797,
           17800458-17800585,17800760-17800891
          Length = 255

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 257 LLREVVERMGKDFNDAASSYLEFPASDRHLAL---MAHASKDLENEQLDYDS 403
           L++E+    G D +    ++L FP SD    +   +AH   D + E+LDYD+
Sbjct: 165 LVKEICPTCG-DHDPKEDTWLMFPGSDIFARVPFHVAHTVLDKDQERLDYDT 215


>11_01_0600 -
           4780579-4780839,4781256-4781324,4781535-4781598,
           4781791-4781919,4782234-4782541
          Length = 276

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 178 KSSMAYRPITKVKPDQTRYDNDERH 104
           K+ M    I+ VKPD TR+D DE H
Sbjct: 139 KNRMIPDRISFVKPDDTRHDTDEDH 163


>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
          Length = 783

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 298 RRGVQLPRVPGQRPPSRPDGAREQGP 375
           R GVQ P+ PG+R  SR   +   GP
Sbjct: 16  RSGVQSPKNPGKRAASRSGASSSDGP 41


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -1

Query: 629 HPWSSVYPTGHGLGGLQYAGRTASVF-TIC-RLGTTPDGRRRSH--PRQHRLLRTDGPTT 462
           HP +  + +GHG GG      TA  F  +C  L +       SH  P +H  L++  P  
Sbjct: 425 HPPADDFHSGHGGGGATKEAATAVAFYPVCAELLSNQSSMSSSHRPPARHTFLQSRLPPP 484

Query: 461 NCAAST 444
             AAS+
Sbjct: 485 VAAASS 490


>03_06_0632 + 35196608-35197087,35198205-35198424,35198521-35198807
          Length = 328

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 491 GAGEGESVSDHRAWSLTDKW*KLTLFCP 574
           G GEG+   D+  + LT+KW      CP
Sbjct: 296 GGGEGKGSGDNTGYLLTNKWISYVQKCP 323


>02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149
          Length = 272

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 488 GGAGEGESVSDHRAWSLTDKW*KLTLFCPRIVTRPIH 598
           G  G+G+  S  R   L  KW  +TLF  R   RPIH
Sbjct: 2   GKLGDGDVESFERVGGLMHKWLGMTLFL-RADLRPIH 37


>05_04_0454 + 21383068-21384525
          Length = 485

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 334 RPPSRPDGAREQGP--GERAAR 393
           RPP  PDGAR  GP   ER A+
Sbjct: 106 RPPDDPDGARSPGPSHSERMAK 127


>02_04_0403 -
           22622014-22622075,22622159-22622350,22624834-22624910,
           22625026-22625039
          Length = 114

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -3

Query: 588 RVTIRGQNSVSFHHLSVR 535
           ++T++G+N V+F HLSVR
Sbjct: 44  KLTLKGKNPVTFDHLSVR 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,892,711
Number of Sequences: 37544
Number of extensions: 546456
Number of successful extensions: 1742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)