Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1451
(764 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical pr... 108 5e-24
U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 29 3.6
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 29 3.6
U53150-4|AAA96126.4| 219|Caenorhabditis elegans Hypothetical pr... 29 4.8
AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical... 29 4.8
AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical... 29 4.8
Z77658-2|CAB01156.1| 457|Caenorhabditis elegans Hypothetical pr... 28 6.3
U53150-3|AAT81197.1| 181|Caenorhabditis elegans Hypothetical pr... 28 6.3
>Z92838-2|CAB07408.1| 211|Caenorhabditis elegans Hypothetical
protein T03D8.3 protein.
Length = 211
Score = 108 bits (259), Expect = 5e-24
Identities = 44/81 (54%), Positives = 54/81 (66%)
Frame = +1
Query: 502 G*ERLRPSGVVPNRQMVKTDAVLPAYCNPPNPCPVGYTEDQGCISEFENTAAFSREYQLS 681
G ++L RQ VK D VLPAYC PPNPCPVG+T++ GC+ EFEN+A FSR YQ
Sbjct: 64 GEQKLLEEDNFQERQEVKVDNVLPAYCEPPNPCPVGFTKEHGCLEEFENSAEFSRNYQAD 123
Query: 682 QRCMCDGEHMFSCPSDSTSDI 744
Q C+CD EHMF+C D+
Sbjct: 124 QHCICDQEHMFNCAEKEAQDV 144
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 434 RDQEYLQHSSLWGHQYVTGGAGEGE 508
RD E L S +G ++++GGAGEGE
Sbjct: 41 RDSENLPDLSSFGVKHISGGAGEGE 65
>U39644-2|AAA80360.2| 966|Caenorhabditis elegans Hypothetical
protein T10E10.4 protein.
Length = 966
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 523 SGVVPNRQMVKTDAVLPAYCNPPNPCPVGY-TEDQGCISE 639
+GV M + ++ + C N CP+GY E +GC E
Sbjct: 634 NGVCCPMPMCSSGSIASSVCGMANSCPIGYICEGRGCCLE 673
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +2
Query: 227 WGKGSFNNGTLLREVVER-MGKDFNDAASSYLEFPASDRHLALMAHASKDLENEQLDYDS 403
W GS ++ L + +E +G D+A+ + RHL + DL Y S
Sbjct: 450 WQSGSPSDEELCEQYIELPIGIQKFDSATQKTAIKSLSRHLISLG----DLHR----YKS 501
Query: 404 LIDGNPSPSLRDQEYLQHSSLW---GHQY 481
LIDG+ + + Y + S LW GH Y
Sbjct: 502 LIDGSENYEISKSCYQKSSQLWPSTGHPY 530
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 29.1 bits (62), Expect = 3.6
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Frame = +2
Query: 227 WGKGSFNNGTLLREVVER-MGKDFNDAASSYLEFPASDRHLALMAHASKDLENEQLDYDS 403
W GS ++ L + +E +G D+A+ + RHL + DL Y S
Sbjct: 607 WQSGSPSDEELCEQYIELPIGIQKFDSATQKTAIKSLSRHLISLG----DLHR----YKS 658
Query: 404 LIDGNPSPSLRDQEYLQHSSLW---GHQY 481
LIDG+ + + Y + S LW GH Y
Sbjct: 659 LIDGSENYEISKSCYQKSSQLWPSTGHPY 687
>U53150-4|AAA96126.4| 219|Caenorhabditis elegans Hypothetical
protein F20A1.6a protein.
Length = 219
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 236 GSFNNGTLLREVVERMGKDFNDAASSY-LEFPASDRHLALMAHASKDLENEQLDYDSLID 412
GSF GT ++ ER G+D N+ +Y E P H ++A + Y
Sbjct: 27 GSFATGTDYQKEKERQGQDPNNYKKTYHKEIPGGSEHAEVVASNEPGSNSWSQTYSKHQS 86
Query: 413 GNPSPSLRDQEYL-QHSSLWGHQYVTGGAGEG 505
S + + Q+ + +H+++ + G G G
Sbjct: 87 FGSSDTQQSQDAMDRHNAIMSNIQHNMGMGFG 118
>AL132858-16|CAB60486.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 365 SRAPSGRDGGRWPGTLGSWTPRR*SLCP 282
S S DGG WP T W R CP
Sbjct: 430 SECASPEDGGEWPKTRTEWAERTYVECP 457
>AL117207-25|CAB61042.2| 538|Caenorhabditis elegans Hypothetical
protein Y113G7A.5 protein.
Length = 538
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -1
Query: 365 SRAPSGRDGGRWPGTLGSWTPRR*SLCP 282
S S DGG WP T W R CP
Sbjct: 430 SECASPEDGGEWPKTRTEWAERTYVECP 457
>Z77658-2|CAB01156.1| 457|Caenorhabditis elegans Hypothetical
protein F14D7.2 protein.
Length = 457
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 298 RRGVQLPRVPGQRPPSRPDGAREQGPGE 381
+R Q+P P +RP S P G R P +
Sbjct: 219 KRETQIPNYPRRRPDSDPPGGRVTSPSD 246
>U53150-3|AAT81197.1| 181|Caenorhabditis elegans Hypothetical
protein F20A1.6b protein.
Length = 181
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 236 GSFNNGTLLREVVERMGKDFNDAASSY-LEFPASDRHLALMA 358
GSF GT ++ ER G+D N+ +Y E P H ++A
Sbjct: 27 GSFATGTDYQKEKERQGQDPNNYKKTYHKEIPGGSEHAEVVA 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,988,426
Number of Sequences: 27780
Number of extensions: 400234
Number of successful extensions: 1114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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