Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1451
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22900.1 68417.m03308 expressed protein                             32   0.48 
At3g48070.1 68416.m05241 expressed protein                             30   1.9  
At5g10720.1 68418.m01242 sensory transduction histidine kinase-r...    29   4.5  
At3g02440.1 68416.m00231 expressed protein                             28   5.9  

>At4g22900.1 68417.m03308 expressed protein 
          Length = 343

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 623 WSSVYPTGHGLGGLQYAGRTASVFTICRLGTTPDGRRRSHPRQHRLLRTD 474
           WSS+Y TG+ L G  Y    + V  +      PDG  R +P +  ++ TD
Sbjct: 112 WSSIYSTGYNLSGYNYK-LVSPVLGLLAYNANPDGVAR-NPYEVNVVGTD 159


>At3g48070.1 68416.m05241 expressed protein
          Length = 319

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +1

Query: 481 RNRRCWRG*ERLRPSGVVPNRQMVKTDAVLPAYCNP----PNPCPVGYTEDQGCISEFEN 648
           ++ + WR  ++LRP G +PN +  ++  V+  + +     P+ CP+ Y +     S F  
Sbjct: 202 KSNQAWRPDDKLRPQG-LPNLEKQRSFPVMNLHFSSVTVVPSSCPICYEDLDLTDSNFLP 260

Query: 649 TAAFSREYQLSQRCMCDGE 705
                R      + +CDG+
Sbjct: 261 CPCGFRLCLFCHKTICDGD 279


>At5g10720.1 68418.m01242 sensory transduction histidine
           kinase-related similar to Sensor protein rcsC (Capsular
           synthesis regulator component C) (SP:Q56128) {Salmonella
           typhi}; sensory transduction histidine kinase slr1759,
           Synechocystis sp., PIR:S75142
          Length = 950

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/90 (23%), Positives = 32/90 (35%)
 Frame = +2

Query: 257 LLREVVERMGKDFNDAASSYLEFPASDRHLALMAHASKDLENEQLDYDSLIDGNPSPSLR 436
           + +++VE MG       S   E       L      S D  ++Q ++  + D    P   
Sbjct: 610 ICKQLVELMGGQLT-VTSRVSEGSTFTFILPYKVGRSDDYSDDQDEFSDMADQQSEPDDT 668

Query: 437 DQEYLQHSSLWGHQYVTGGAGEGESVSDHR 526
            + Y Q   L G  Y  GG G       H+
Sbjct: 669 AEGYFQFKPLLGSIYSNGGPGISNDFLPHK 698


>At3g02440.1 68416.m00231 expressed protein
          Length = 373

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 296 NDAASSYLEFPASDRHLALMAHASKDLENEQLDYDSLIDGN----PSPSLRDQEYLQHSS 463
           N ++SS +  P+   H +  + + K  ++E   YD+  D       S SL + + L  SS
Sbjct: 46  NSSSSSAISSPSRYNHSSSSSDSYKTEDSEPSSYDNDYDDTYHDPKSSSLHNNDRLSISS 105

Query: 464 LWGHQYVT 487
             GH  VT
Sbjct: 106 SNGHHQVT 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,111,528
Number of Sequences: 28952
Number of extensions: 375958
Number of successful extensions: 974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)