Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1450
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    27   2.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.5  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   3.3  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    26   5.7  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   7.6  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   7.6  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   7.6  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    25   10.0 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   10.0 
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   10.0 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   10.0 

>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 329 PSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESPVLGRALCLTPR 481
           P   R Q  FQ  S   L+  + +   +  R    P+ + V  RA+C  PR
Sbjct: 165 PPLTREQAIFQISSGSNLYTSREVNDSISQRLKKFPKAANVKLRAICTVPR 215


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +2

Query: 287 PQTTHGSPYHVHPYPSPVRLQHAFQAQSSPK---LFHPKGLKPHLDARTFATPQESPV 451
           P  +H +P H    PS    Q   QAQ  P+   LF    L     +R   +P  SPV
Sbjct: 71  PSFSHAAPLHPLSPPSFTHSQPQIQAQPVPRRPSLFDRPNLVSRSSSRLGDSPSLSPV 128


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 186 HICESCIGQIMEENKSKHKTLQNLLIISR*TAYNHRRRTGHLTMYTLIPRQSGCSTPSR 362
           + CE C  +I    +++H+     L ISR   YN+     H     + P+  G  T S+
Sbjct: 538 YTCEECEQKITLSERNEHEDYHIALSISRKERYNNLVPPSHDKPKQVKPKTYGRKTGSK 596


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 253 ICSSYRVRLHTTTDDARVTLPCTPLSL 333
           + SS+  ++  T  +A+VTL C P SL
Sbjct: 269 VLSSHLPKIAETLTEAKVTLKCDPASL 295


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 22/84 (26%), Positives = 34/84 (40%)
 Frame = +1

Query: 313 PCTPLSLASQAAARLPGPEQSETVPS*RAQTSSGRSYFCYAARESSAGQGFVPHTERQPD 492
           P TPLS+++   A    P  + T P    + +S  +    A  + S    ++    R P+
Sbjct: 343 PSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAAAAAALAKESPSHHYIMQQVR-PE 401

Query: 493 TRPGVYLNEKFQDSLTLNSDTDSL 564
           T     LN     S  + S  DSL
Sbjct: 402 TPNSPRLN-----STVIQSKWDSL 420


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 323 PYPSPVRLQHAFQAQSSPKLFHPK 394
           P PSP+RL  A + +  P+ + PK
Sbjct: 89  PSPSPLRLNEAPRRRGRPRKYPPK 112


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 526 QDSLTLNSDTDSLVAKISAMFPTVSETHI 612
           Q SLTL++D  +  AK+  +   +S+THI
Sbjct: 242 QGSLTLSADKAARSAKLRKIDSNLSDTHI 270


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 21  TNLQISKWIIKNK 59
           TN ++S+W+IKNK
Sbjct: 140 TNSELSRWLIKNK 152


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 386  HPKGLKPHLDARTFATPQESPVLG 457
            HPK +KPH + R F T   +PV G
Sbjct: 2068 HPKTIKPHPNFRLFLT--VNPVYG 2089


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +2

Query: 281 IQPQTTHGSPYHVHPYPSPVRLQ-HAFQAQSS----PKLFHPKGLKPHLDARTFATPQES 445
           IQ + T GSP      PS  R + H   + S      K F P+  +P L  +T  + QES
Sbjct: 475 IQNRGTKGSPKEPKAKPSTERPETHRTLSYSRLSELSKTFSPEIREPSLTKKTAVSMQES 534

Query: 446 PVLGRA 463
              GR+
Sbjct: 535 KEEGRS 540


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 133 ANY*DSKIFLSNFCDTHVISVS 198
           ANY D+ IFLS  C+T  I VS
Sbjct: 416 ANY-DNYIFLSLICETRAIIVS 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,685
Number of Sequences: 5004
Number of extensions: 56863
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)