Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1450
(676 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_50421| Best HMM Match : CUB (HMM E-Value=0) 30 1.5
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 30 1.5
SB_11670| Best HMM Match : TP2 (HMM E-Value=3.5) 30 2.0
SB_46207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_27802| Best HMM Match : Filament (HMM E-Value=0.2) 29 4.5
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_41229| Best HMM Match : rve (HMM E-Value=0.0012) 29 4.5
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021) 28 6.0
SB_56197| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08) 28 7.9
SB_23852| Best HMM Match : DNA_pol_A (HMM E-Value=0) 28 7.9
>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 33.1 bits (72), Expect = 0.21
Identities = 25/71 (35%), Positives = 30/71 (42%)
Frame = +2
Query: 287 PQTTHGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESPVLGRAL 466
P +T G+PY P SP + QA P+L HP G P L + PQ S R
Sbjct: 26 PMSTAGAPY---PGMSPTPVSSYGQATPPPQLQHPSGPNPGLGSAA-GYPQSSGGQIRGA 81
Query: 467 CLTPRGSPIPG 499
G PI G
Sbjct: 82 GQPVMGGPIGG 92
>SB_50421| Best HMM Match : CUB (HMM E-Value=0)
Length = 270
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 553 CQS*ASKSLETSRSDRHPAWYRAASRCEAQSPAQHWTLLRRSKSTSVQMRFEPFRME 383
C K+ T +S ++P+WY ++ C WT+ K + V MRF F +E
Sbjct: 157 CGGPIRKAHGTIQSPKYPSWYPSSKECV-------WTIAFPGKGSRVGMRFVAFDVE 206
>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 812
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +2
Query: 278 CIQPQTTHGSPYHVHPYPSPVRLQHAFQAQS----SPKLFHPKGLKP 406
C+ P HG+P VHP P P + A A S S HP+ +KP
Sbjct: 556 CLFPARGHGAPLSVHPLP-PSDTEGAKSAFSTIAKSGTFIHPRVMKP 601
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 30.3 bits (65), Expect = 1.5
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Frame = +1
Query: 274 RLHTTTDDARVTLPCTPLSLASQAAARLPGPEQSETVPS*RAQTSSGR-SYFCYAARESS 450
R TT R T PLS S + + P P S PS R + G S A S
Sbjct: 281 RTTKTTTTMRRTASTLPLSNQSSSTSTTPQP-SSPATPSSRDHPTRGMLSTRESALTYSK 339
Query: 451 AGQGFVPHTERQPDT---RPGVYLNEKFQDSLTLNSDTDSLVAKISAMFPTV 597
G F+P T+ P T R + Q S +S +S V + S + P++
Sbjct: 340 QGFHFMPSTQESPVTTFGRDSTQASSVTQGSSFTSSTHESSVTRGSPVTPSM 391
>SB_11670| Best HMM Match : TP2 (HMM E-Value=3.5)
Length = 543
Score = 29.9 bits (64), Expect = 2.0
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Frame = +1
Query: 283 TTTDDARVTLPCTPLSLASQAAARLPGPEQSETVPS*RAQTSSGRSYFCYAARESSAG-- 456
T TD A V P P+S +A ++ PG + V T+ G S + S+AG
Sbjct: 74 TDTDHAEVAGPGNPVSKMVRATSQRPGKVK---VMYSSESTTRGGSVWRRKGWSSNAGGR 130
Query: 457 -QGFVPHTERQPDTRPGVYLNEKFQDSLTLNSDTDSLVAKISAMF 588
G PH E TR GV N SL N+ T + S F
Sbjct: 131 SAGQRPHQETLNTTRDGVRTN---NSSLRKNAYTRPVNGSTSGRF 172
>SB_46207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 310 LPCTPLSLASQAAARLPGPEQSETVPS*RAQTSSGRSYFCYAARESSAGQGFVPHTERQP 489
L C PLS SQ R S ++ S + + S Y +E+SA + + H R+
Sbjct: 53 LSCVPLSDMSQTQQRFICALASLSITSSNEEAFANASPAKYREKETSASRELIKHFRRRC 112
Query: 490 DTR 498
TR
Sbjct: 113 RTR 115
>SB_27802| Best HMM Match : Filament (HMM E-Value=0.2)
Length = 528
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 114 HVSSIRCQLLR*QDFPQQFL*YSCHICESCIGQIMEENKSKHKTLQ 251
H+ +R QL ++ Q+ + Y C++ E I Q+M++ S KT+Q
Sbjct: 484 HMEQLRGQLTMAENVYQEKV-YECNMMEMQIHQLMQQLNSAKKTMQ 528
>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1806
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 398 LKPHLDARTFATPQESPVLGRALCLTPR 481
+ P L RT+AT ++PVL L TPR
Sbjct: 460 ITPALQVRTYATSDQTPVLLTLLRFTPR 487
>SB_41229| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 625
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 223 RTNLNTRLCRICSSYRVRLHTTT 291
+ NL+T+L R SYR LH TT
Sbjct: 421 KKNLDTKLSRFLLSYRTTLHATT 443
>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
Length = 358
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +2
Query: 260 HHIALDCIQ-PQTTHGSPYHVHPYPSPVRLQH 352
HH Q P PYH HPYPS + H
Sbjct: 147 HHFVQPPYQVPPPPTPQPYHPHPYPSSGPMHH 178
>SB_56197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 538 TLNSDTDSLVAKISAMFPTVSETHIKLLLKKYYNREVS*SAL 663
TLNSD + + + T+ HI+ L+K +RE++ AL
Sbjct: 4 TLNSDLEHCQEALQYKYGTIKSIHIQSRLEKARSREMTRKAL 45
>SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 157 FLSNFCDTHVISVSLV*VKLWRRTNLNTRLCRICSSYRVRLHT-TTDD 297
FL+ C ++S + + +L+R+T + R+C + +R T TT D
Sbjct: 198 FLTAVCLVFIVSTAYLGYRLYRKTKESPRMCSENGRFSMRASTRTTSD 245
>SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)
Length = 573
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 226 TNLNTRLCRICSSYRVRL-HTTTDDARVTLPCTPLSLASQ 342
T R+C IC YR L DD+R ++ L ASQ
Sbjct: 534 TRFTRRICAICCRYRAHLSRLAWDDSRRSVRAFALESASQ 573
>SB_23852| Best HMM Match : DNA_pol_A (HMM E-Value=0)
Length = 353
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +1
Query: 502 GVYLNEKFQDSLT--LNSDTDSLVAKISA 582
G+ LNEKF +SL+ L+SD +L AKI A
Sbjct: 58 GINLNEKFLNSLSTQLDSDIKTLEAKIYA 86
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,630,698
Number of Sequences: 59808
Number of extensions: 459471
Number of successful extensions: 1301
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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