Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1450
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46937-4|CAA87059.2|  221|Caenorhabditis elegans Hypothetical pr...    31   0.75 
AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    31   0.75 
Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    29   4.0  
AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF039047-9|AAB94228.1|  303|Caenorhabditis elegans Hypothetical ...    28   5.3  
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    27   9.2  

>Z46937-4|CAA87059.2|  221|Caenorhabditis elegans Hypothetical
           protein F43C1.5 protein.
          Length = 221

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 550 DTDSLVAKISAMFPTVSETHIKLLLKKY 633
           D D  +    AMFP++S +HI+ +L+KY
Sbjct: 20  DFDRAMLDFQAMFPSLSNSHIEYVLRKY 47


>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +2

Query: 329 PSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQESPVLGRALCLTPRGSPI 493
           P P  LQH    + SP LFH    KP   +RT     ESP   +A       SP+
Sbjct: 312 PPPSSLQHHHHHRRSPPLFHSPVYKPKPRSRT-----ESPAALKAAAAAASQSPV 361


>Z82090-4|CAB05008.2|  543|Caenorhabditis elegans Hypothetical
           protein ZK337.2 protein.
          Length = 543

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 262 SYRVRLHTTTDDARVTLPCTPLSLASQAAARLP 360
           S  +R H+ TDD+ ++ P + LS+ S   + LP
Sbjct: 441 SRHMRTHSLTDDSSISTPISQLSIRSATTSPLP 473


>Z70684-6|CAA94595.1|  230|Caenorhabditis elegans Hypothetical
           protein F28D1.6 protein.
          Length = 230

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 287 PQTTHGSPYHVHPYPSPVRL-QHAFQAQSSPKLFHPKGLKPHL 412
           P  THG+P+   PYP PV +    F   + P  F    LK H+
Sbjct: 188 PNGTHGNPFF--PYPRPVDIWDRLFVLAAFPICFFAVMLKAHM 228


>AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 287 PQTTHGSPYHVHPYPSPVRLQHAFQAQSSPKLFH 388
           P   HG P H  P P  +  QH  +  SSP+ FH
Sbjct: 294 PYQPHGHPAHHIPNPHQLHHQHR-RRYSSPRRFH 326


>AF125445-1|AAD12803.2|  550|Caenorhabditis elegans Hypothetical
           protein Y24D9B.1 protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 287 PQTTHGSPYHVHPYPSPVRLQHAFQAQSSPKLFH 388
           P   HG P H  P P  +  QH  +  SSP+ FH
Sbjct: 294 PYQPHGHPAHHIPNPHQLHHQHR-RRYSSPRRFH 326


>Z81094-6|CAB03154.1|  666|Caenorhabditis elegans Hypothetical
           protein F58G11.3a protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 481 RQPDTRPGVYLNE--KFQDSLTLNSDTDSLVAKISAMFPTVSETHIKLLLKKYYN 639
           + P+++P   L    K  D LTLN+      A  S M P + + H +++ K++ N
Sbjct: 361 QDPNSKPKADLASISKSLDGLTLNARKSKKEASKSDMMPFIPKNHREIVTKRFGN 415


>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
            R09E10.7 protein.
          Length = 1717

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 451  HWTLLRRSKSTSVQMRFEPFRMEQFRTALGLEGVLQP 341
            HW  +RR KS    M    ++  Q + AL ++ +L P
Sbjct: 962  HWETIRREKSELTSMLLVRYKDSQEKCALVIDRILDP 998


>AF039047-9|AAB94228.1|  303|Caenorhabditis elegans Hypothetical
           protein K11D12.8 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 109 YNTTISIYVY*KQ--PVNYLFFMIHLEICRFVFVVLMK 2
           YN  ISIY + +     NY FF++   +  F+F VL K
Sbjct: 214 YNFEISIYFFSQTNFKANYSFFVVFFYLLFFIFPVLKK 251


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 133 QRMEDTWYYNTTISIYVY*KQPVNYLF--FMIHLEICRFVFVVL 8
           Q MEDT       S+Y +  +  +++F  F I L ICRFVF  L
Sbjct: 665 QSMEDTAPVFENRSVYPFYFRSGSFIFTAFYIVLLICRFVFQAL 708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,648,785
Number of Sequences: 27780
Number of extensions: 336742
Number of successful extensions: 906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)