Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1450
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 299 HGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKGLKPHLDARTFATPQES 445
           H   +  HP+  P + QH  QAQ      H + +      ++ A  Q+S
Sbjct: 169 HHQMHTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS 217


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 242 DSAESAHHIALDCIQPQTTH 301
           D  E+ + + LDC Q + TH
Sbjct: 862 DCPEAIYQLMLDCWQKERTH 881


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = +2

Query: 218 GGEQI*TQDSAESAHHIALDCIQPQTTHGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKG 397
           GGE+I  + S +S HH+     +P+     P         V +    +  SS K +  +G
Sbjct: 151 GGEEITPRQSHQSYHHMDSVEYKPEIMEYKPDVEEQRYKQVEISQMTEPSSSTKSYVLEG 210


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/31 (25%), Positives = 13/31 (41%)
 Frame = +2

Query: 260 HHIALDCIQPQTTHGSPYHVHPYPSPVRLQH 352
           HH       P   H +P     YP+ +++ H
Sbjct: 431 HHHHSHAATPHHQHSTPLAHSSYPAAIQIGH 461


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,207
Number of Sequences: 438
Number of extensions: 4320
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)