Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1450
         (676 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa...    29   3.8  
At5g21160.1 68418.m02528 La domain-containing protein / proline-...    28   5.0  
At1g58220.1 68414.m06612 myb family transcription factor contain...    28   5.0  
At3g23760.1 68416.m02987 expressed protein                             28   6.6  

>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 368

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +1

Query: 277 LHTTTDD---ARVTLPCT-PLSLASQAAAR---LPGPEQSETVPS*RAQTSSGRSYFCYA 435
           LH   DD   + V LP + P    + A +    LP    +E+      QTSS R   CYA
Sbjct: 23  LHAADDDPPLSHVVLPISQPNRFCNSAMSSFFPLPTSSSNESTRKKPYQTSSFRGMGCYA 82

Query: 436 ARESSAGQGFVPHTER 483
           A  ++A +  VP   R
Sbjct: 83  AAAAAAQEVSVPSVIR 98


>At5g21160.1 68418.m02528 La domain-containing protein /
           proline-rich family protein contains proline-rich
           extensin domains, INTERPRO:IPR002965, PF05383: La domain
          Length = 826

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 287 PQTTHGSPYHVHPYPSPVRLQHA 355
           P   H  PYH  P+P  V L HA
Sbjct: 125 PYLVHAVPYHPPPFPPMVPLPHA 147


>At1g58220.1 68414.m06612 myb family transcription factor contains
           Pfam profile: PF00249: Myb-like DNA-binding domain
          Length = 834

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 293 TTHGSPYHVHPYPSPVRLQHAFQAQSSPKLFHPKGLKP--HLDARTFATPQESPVLGRAL 466
           T   SP+    + +P+      Q+ S P  F    L P     A T  TPQ+  V+  A 
Sbjct: 610 TIPSSPFTKPLHMAPLSKGSTIQSNSVPPSFASSRLVPTQRAPAATVVTPQKPSVVAAAT 669

Query: 467 CLTPR 481
            +TP+
Sbjct: 670 VVTPQ 674


>At3g23760.1 68416.m02987 expressed protein
          Length = 194

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 142 NNWQRMEDTWYYNTTISIYVY*KQPVNYLFF 50
           N W+++E  WYY   ++     K+PV ++F+
Sbjct: 133 NVWEKVEFLWYYEDVVT-----KRPVQWIFY 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,649,823
Number of Sequences: 28952
Number of extensions: 305905
Number of successful extensions: 798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)