Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1449
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 89 6e-19
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 40 5e-04
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 35 0.014
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||... 34 0.024
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 32 0.074
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch... 31 0.23
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.91
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 28 1.2
SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|ch... 28 1.6
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.6
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 27 3.7
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 27 3.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.7
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 6.4
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 26 6.4
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 6.4
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 8.5
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 89.0 bits (211), Expect = 6e-19
Identities = 40/86 (46%), Positives = 56/86 (65%)
Frame = +1
Query: 283 EVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDC 462
++R SHLLVKH SRRPSSW+EEHITR+KEEA + + Y + + +LA SDC
Sbjct: 66 KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDC 125
Query: 463 SSAKRDGDLGRFKKGQCRNHLKTSHF 540
SSA+R G+LG F + + + + + F
Sbjct: 126 SSARRGGELGEFGRDEMQKPFEDAAF 151
Score = 50.0 bits (114), Expect = 3e-07
Identities = 24/41 (58%), Positives = 27/41 (65%)
Frame = +3
Query: 489 GSFQERSMQKPFEDVAFSLKIGQLSQPVHTDSGIHIILRTA 611
G F MQKPFED AF+LK G++S V T SG HII R A
Sbjct: 135 GEFGRDEMQKPFEDAAFALKPGEISGVVETSSGFHIIQRHA 175
Score = 32.7 bits (71), Expect = 0.056
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP+ W + SRS Y+ N T +S WE P
Sbjct: 6 LPKPWIVKISRSRNRPYFFNTETHESLWEPP 36
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +2
Query: 59 RKRKNLLAFPAQRTNDMASTQEEI--LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
R+ N A + M+S +++ LP GWE R++ S G TYY++ +T+ + W +P
Sbjct: 212 RQTNNTSALSNSNAHIMSSFEDQYGRLPPGWE-RRADSLGRTYYVDHNTRTTTWTRP 267
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 34.7 bits (76), Expect = 0.014
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPAS 238
LP GWE R + +T Y+++ +TK + W+ P P+S
Sbjct: 347 LPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPSS 381
>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 33.9 bits (74), Expect = 0.024
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +1
Query: 271 GIPKEVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELAST 450
GI ++ S L + S S + E + K++A +QE+R+K + KF+EL +
Sbjct: 38 GIQGQISASFLSLSRSIDDYDSMVQRELVPAKKKKATIRIQEFRQKHVQLLEKFDELKAH 97
Query: 451 YSDCSSAKRDGDL 489
D + AK +L
Sbjct: 98 VRDIAQAKNRKEL 110
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 32.3 bits (70), Expect = 0.074
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP GW K+ S G+ YY N KKS +++P
Sbjct: 5 LPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34
>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 562 LNCPIFKENATSSN-GFCIDLS*NDPNPHHVLLMNNQNM 449
L+ PI +NAT N G ID + NPHH L + Q +
Sbjct: 193 LSFPIGFKNATDGNIGIAIDAMNSSANPHHFLSVTKQGV 231
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.7 bits (61), Expect = 0.91
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 125 EILPEGWEARKSRSTGMTYYLNKHTK--KSQWEKP 223
E LP GW A+ G +Y+N+ + + QWE P
Sbjct: 8 EGLPSGWVAQWDAEYGTYFYVNESAQNPQPQWEPP 42
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 143 WEARKSRSTGMTYYLNKHTKKSQWEKP 223
W K+ + + YY N T+KS WEKP
Sbjct: 36 WHEVKTEDSRV-YYYNSVTRKSVWEKP 61
>SPBC660.09 |mug168||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 495 FQERSMQKPFEDVAFSLK-IGQLSQPVHTDSGI 590
F++R + KP + F + IG LSQ VH+ GI
Sbjct: 8 FEDRKVSKPSPVLPFDVSNIGDLSQGVHSPLGI 40
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 107 MASTQEEILPEGWEARKSRSTGMTYYLNKHTKKS--QWEKP 223
MA E LP GW A+ +Y+N+ K+ QWE P
Sbjct: 1 MAYQTREGLPNGWVAQWDERYKCYFYVNESDPKAKPQWECP 41
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 274 IPKEVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRK 408
IP + C HL+V H G+ +S + I K E D LQ +K
Sbjct: 120 IPASIHCDHLIVGHRGA---NSDIPDSIANNK-EIFDFLQSAAKK 160
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 424 AKFEELASTYSDCSSAKRDGDLGRFKK 504
+KF LAS Y + A + G+LG F K
Sbjct: 295 SKFPNLASVYIPLTRALKSGNLGEFGK 321
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +1
Query: 337 SWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKK 504
S REE IT + E LD+ + ++E+ +ELA D + ++D L FKK
Sbjct: 999 STREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLED-AVREKDSALS-FKK 1052
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 349 EHITRTKEEALDILQEYRRKI-IDREAKFEELASTYSD 459
E++ K + ++ E R + REAKFE L ++ SD
Sbjct: 761 EYVLYKKSKGSQVITEKARSNELSREAKFENLVASLSD 798
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 41 NFLLQLRKRKNLLAFPAQRTNDMASTQEEILPE 139
N LL+ +KR + F QR+ AST + L E
Sbjct: 151 NILLENKKRVSFYPFSVQRSQKFASTLKMCLEE 183
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 490 PNPHHVL-LMNNQNMYLPALQI 428
P P HV +M+++N YL ALQ+
Sbjct: 532 PKPSHVKNIMHHENQYLQALQL 553
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 23 KVRNVKNFLLQLRKRKNLLAFPAQRTNDMASTQ--EEILPEGWEARKSRSTGMTYYLNKH 196
+++N+K L+ K ++ + D++ E+ PE WE++ S YY
Sbjct: 396 RLKNLKRKELE-EKLNQVIEIAGSKNIDVSKLDLDEDFDPEKWESKMSEIFNENYYEEDS 454
Query: 197 TKKSQW 214
KK ++
Sbjct: 455 AKKPEF 460
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,164
Number of Sequences: 5004
Number of extensions: 57699
Number of successful extensions: 170
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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