Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1449
         (736 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           46   2e-06
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   4.2  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   7.4  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   9.8  

>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 45.6 bits (103), Expect = 2e-06
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGGPA 235
           LP GWE R +++ G TYY+N +TK +QW +P  PA
Sbjct: 163 LPRGWEERSAQN-GRTYYVNHYTKTTQWSRPTEPA 196



 Score = 30.3 bits (65), Expect = 0.065
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
           LP GWE RK+ S G  Y+++ + + +Q+  P
Sbjct: 376 LPHGWEQRKTAS-GRVYFVDHNNRTTQFTDP 405


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 562 ANQFTLTLAFISFLELPKDCFHS*YYLKKCKTIISN 669
           A  F L+L+   F  L K C+    + K C++I+SN
Sbjct: 510 AKIFNLSLSLGVFPALWKSCWLFPVHKKGCRSIVSN 545


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 454  SDCSSAKRDGDLGRFKKGQCRNHLK 528
            S  +SAK+  DL  F+K Q R  LK
Sbjct: 1539 SGSTSAKQYRDLETFQKAQLRQKLK 1563


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 419  EKLNLKSWQVHILIVHQQNVMGIWVVSR 502
            E+LN  S Q+ I+  HQ N    ++V R
Sbjct: 1172 ERLNRASNQIAIVTTHQANTTAQFLVFR 1199


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,210
Number of Sequences: 2352
Number of extensions: 13951
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)