Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1449
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024746-15|AAF60409.1| 168|Caenorhabditis elegans Hypothetical... 97 2e-20
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 41 0.001
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 41 0.001
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 36 0.039
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 36 0.039
AL034392-2|CAA22305.1| 120|Caenorhabditis elegans Hypothetical ... 35 0.052
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 0.64
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 31 0.64
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr... 31 0.85
Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL117203-11|CAB55116.1| 126|Caenorhabditis elegans Hypothetical... 29 4.5
AC087082-1|AAG37982.2| 157|Caenorhabditis elegans Hypothetical ... 29 4.5
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical ... 28 6.0
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 28 7.9
AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensor... 28 7.9
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 28 7.9
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 28 7.9
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 28 7.9
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 28 7.9
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 7.9
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 28 7.9
>AC024746-15|AAF60409.1| 168|Caenorhabditis elegans Hypothetical
protein Y110A2AL.13 protein.
Length = 168
Score = 96.7 bits (230), Expect = 2e-20
Identities = 49/102 (48%), Positives = 67/102 (65%), Gaps = 10/102 (9%)
Frame = +1
Query: 265 EGGIPKEVRCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQ-------EYRRKIIDR- 420
+G K V+C HLLVKH GSR PSSWR +HITR+K++A++IL+ Y +++ D
Sbjct: 43 KGSELKSVQCLHLLVKHDGSRNPSSWRSDHITRSKDDAINILKSADLRNFHYEKELKDAS 102
Query: 421 --EAKFEELASTYSDCSSAKRDGDLGRFKKGQCRNHLKTSHF 540
E KF ELA +SDCSSAKR GDLG F++ Q + + + F
Sbjct: 103 NIEGKFRELAKQFSDCSSAKRGGDLGPFERRQMQKPFEDASF 144
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +3
Query: 489 GSFQERSMQKPFEDVAFSLKIGQLSQPVHTDSGIHIILR 605
G F+ R MQKPFED +F+L+IG++S V T SG+H+I R
Sbjct: 128 GPFERRQMQKPFEDASFALEIGEMSDIVDTSSGVHLIYR 166
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/31 (58%), Positives = 21/31 (67%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
LP GWE R+SRS YY N T +SQWE+P
Sbjct: 6 LPAGWEKRQSRSNDRVYYFNTATGRSQWERP 36
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 83 FPAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
F Q+ N A LPEGWE R+ +T Y++N + +QWE P
Sbjct: 310 FLLQQNNFSADDPLGPLPEGWEKRQDPNTSRMYFVNHVNRTTQWEDP 356
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 110 ASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
A+ EE LP+GWE R + G YY++ TK + WE+P
Sbjct: 214 AAGAEEQLPDGWEMRFDQY-GRKYYVDHTTKSTTWERP 250
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 98 TNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
T + STQ LP+GWE R+ G YY++ +T+ + W++P
Sbjct: 246 TWERPSTQP--LPQGWEMRRD-PRGRVYYVDHNTRTTTWQRP 284
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 83 FPAQRTNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
F Q+ N A LPEGWE R+ +T Y++N + +QWE P
Sbjct: 310 FLLQQNNFSADDPLGPLPEGWEKRQDPNTSRMYFVNHVNRTTQWEDP 356
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 110 ASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
A+ EE LP+GWE R + G YY++ TK + WE+P
Sbjct: 214 AAGAEEQLPDGWEMRFDQY-GRKYYVDHTTKSTTWERP 250
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +2
Query: 98 TNDMASTQEEILPEGWEARKSRSTGMTYYLNKHTKKSQWEKP 223
T + STQ LP+GWE R+ G YY++ +T+ + W++P
Sbjct: 246 TWERPSTQP--LPQGWEMRRD-PRGRVYYVDHNTRTTTWQRP 284
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +2
Query: 65 RKNLLAFPAQRTNDMASTQEEILPEG---WEARKSRSTGMTYYLNKHTKKSQWEKP 223
+K + +R N+ + ++E L + W KS + G TYY NK TK++QW P
Sbjct: 1323 QKEAIKAACRRANEEEAKRQEALAKTKYVWAIAKSEA-GETYYYNKITKETQWTAP 1377
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +2
Query: 65 RKNLLAFPAQRTNDMASTQEEILPEG---WEARKSRSTGMTYYLNKHTKKSQWEKP 223
+K + +R N+ + ++E L + W KS + G TYY NK TK++QW P
Sbjct: 1337 QKEAIKAACRRANEEEAKRQEALAKTKYVWAIAKSEA-GETYYYNKITKETQWTAP 1391
>AL034392-2|CAA22305.1| 120|Caenorhabditis elegans Hypothetical
protein Y40B1A.2 protein.
Length = 120
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +2
Query: 140 GWEARKSRSTGMTYYLNKHTKKSQWEKP 223
GW + S S+G YY NK T+ SQW+KP
Sbjct: 10 GWTEQMS-SSGKMYYYNKKTEISQWDKP 36
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 101 NDMASTQEEILPEG----WEARKSRSTGMTYYLNKHTKKSQWEKP 223
+D T E L + W+ S+S + YY+ + ++K+QWE P
Sbjct: 3035 SDFGPTSEHFLNQSVTLPWQRAISKSNLLPYYIEQTSEKTQWEHP 3079
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 101 NDMASTQEEILPEG----WEARKSRSTGMTYYLNKHTKKSQWEKP 223
+D T E L + W+ S+S + YY+ + ++K+QWE P
Sbjct: 3035 SDFGPTSEHFLNQSVTLPWQRAISKSNLLPYYIEQTSEKTQWEHP 3079
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 101 NDMASTQEEILPEG----WEARKSRSTGMTYYLNKHTKKSQWEKP 223
+D T E L + W+ S+S + YY+ + ++K+QWE P
Sbjct: 3035 SDFGPTSEHFLNQSVTLPWQRAISKSNLLPYYIEQTSEKTQWEHP 3079
>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
protein K01A6.2 protein.
Length = 1092
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 131 LPEGWEARKSRSTGMTYYLNKHTKKSQWEKPGG 229
LP GWE ++ G T+Y++ +K+Q+E+P G
Sbjct: 332 LPPGWEQVDDQNYG-TFYVDHINRKTQYERPYG 363
>Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical
protein ZK1098.1 protein.
Length = 724
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 170 GMTYYLNKHTKKSQWEKPGG 229
G YY N TKK+QW KP G
Sbjct: 137 GKPYYYNTLTKKTQWVKPDG 156
>AL117203-11|CAB55116.1| 126|Caenorhabditis elegans Hypothetical
protein Y48C3A.16 protein.
Length = 126
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 507 SMQKPFEDVAFSLKIGQLSQPVHTD 581
SM PF+D AF+L +P++TD
Sbjct: 84 SMVGPFQDAAFALSNSSCDKPIYTD 108
>AC087082-1|AAG37982.2| 157|Caenorhabditis elegans Hypothetical
protein Y92H12BM.1 protein.
Length = 157
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 143 WEARKSRSTGMTYYLNKHTKKSQWEKPGG 229
WE S+ TG YY N + ++W+KP G
Sbjct: 9 WELFDSK-TGRYYYYNASSSVTKWQKPTG 36
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 289 RCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCS- 465
+C L +K + + + + ++R ++E L+ + ++ + +A EE+ + Y D +
Sbjct: 24 KCEELTLKFEQADKEKNEMVQQLSRLQQEMLEKCDALQAEVNEAKALREEIQAKYDDVTQ 83
Query: 466 SAKR-DGDLGRFKK 504
A+R G+L KK
Sbjct: 84 KAERIQGELEESKK 97
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 289 RCSHLLVKHSGSRRPSSWREEHITRTKEEALDILQEYRRKIIDREAKFEELASTYSDCS- 465
+C L +K + + + + ++R ++E L+ + ++ + +A EE+ + Y D +
Sbjct: 24 KCEELTLKFEQADKEKNEMVQQLSRLQQEMLEKCDALQAEVNEAKALREEIQAKYDDVTQ 83
Query: 466 SAKR-DGDLGRFKK 504
A+R G+L KK
Sbjct: 84 KAERIQGELEESKK 97
>AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical
protein K09F6.9 protein.
Length = 609
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 394 EYRRKIIDREAKFEELASTYSDCSSAKRDGDLGRFKKGQ 510
E R+K I+ + K EE D A+RD + R K+ +
Sbjct: 205 EARKKYIETQKKAEENEEKRRDAQKAERDAHIARHKQAE 243
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 93 CAGNANRFLRFLNCRRK 43
C GN+NRF+R +CR +
Sbjct: 34 CGGNSNRFMRRAHCRNR 50
>AF067945-8|ABQ13060.1| 255|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform j protein.
Length = 255
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 93 CAGNANRFLRFLNCRRK 43
C GN+NRF+R +CR +
Sbjct: 79 CGGNSNRFMRRAHCRNR 95
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 93 CAGNANRFLRFLNCRRK 43
C GN+NRF+R +CR +
Sbjct: 79 CGGNSNRFMRRAHCRNR 95
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 93 CAGNANRFLRFLNCRRK 43
C GN+NRF+R +CR +
Sbjct: 79 CGGNSNRFMRRAHCRNR 95
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 93 CAGNANRFLRFLNCRRK 43
C GN+NRF+R +CR +
Sbjct: 79 CGGNSNRFMRRAHCRNR 95
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 93 CAGNANRFLRFLNCRRK 43
C GN+NRF+R +CR +
Sbjct: 79 CGGNSNRFMRRAHCRNR 95
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 93 CAGNANRFLRFLNCRRK 43
C GN+NRF+R +CR +
Sbjct: 79 CGGNSNRFMRRAHCRNR 95
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 93 CAGNANRFLRFLNCRRK 43
C GN+NRF+R +CR +
Sbjct: 79 CGGNSNRFMRRAHCRNR 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,600
Number of Sequences: 27780
Number of extensions: 329335
Number of successful extensions: 950
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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