Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1448
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    37   2e-04
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    37   2e-04
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    24   1.3  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    24   1.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 512 VASFPFDTVRTRLIAEQ---KTNKVYNGFLNALSVMIKTEGPVVLFKG 646
           + S+PFDTVR R++ +    K+  +Y   L+  + + KTEG    FKG
Sbjct: 228 IVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 249 SRPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEK 413
           S+ I+++Q  +Y  ++     I +E+G  + W G++   +       L FA  +K
Sbjct: 44  SKQISEEQ--RYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDK 96


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 512 VASFPFDTVRTRLIAEQ---KTNKVYNGFLNALSVMIKTEGPVVLFKG 646
           + S+PFDTVR R++ +    K+  +Y   L+  + + KTEG    FKG
Sbjct: 228 IVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +3

Query: 249 SRPITDKQGSKYSSILQALGSIIREEGVATLWSGHIPAQLLSISYGILQFATFEK 413
           S+ I+++Q  +Y  ++     I +E+G  + W G++   +       L FA  +K
Sbjct: 44  SKQISEEQ--RYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDK 96


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 546 LVRTVSNGNEATVQRLLRL-NHC-KS*SSAYDSCKIGDRHSDTY 421
           ++  V  GN   +Q +  + N C ++     D C IG++++D Y
Sbjct: 93  MIEVVHAGNADDIQLVKGIANECIENAKGETDECNIGNKYTDCY 136


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 546 LVRTVSNGNEATVQRLLRL-NHC-KS*SSAYDSCKIGDRHSDTY 421
           ++  V  GN   +Q +  + N C ++     D C IG++++D Y
Sbjct: 93  MIEVVHAGNADDIQLVKGIANECIENAKGETDECNIGNKYTDCY 136


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 536 VRTRLIAEQKTNKVYNGFLNALSVMIKTEGPVVLF 640
           V  + +     +K  N FL   S+M + E P V+F
Sbjct: 664 VAIKTLKPGSADKARNDFLTEASIMGQFEHPNVIF 698


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -3

Query: 546 LVRTVSNGNEATVQRL-LRLN 487
           L+R VSN N+  V +L LRL+
Sbjct: 35  LIRPVSNNNDTVVVKLGLRLS 55


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 225 SEDKISTSSRPITDKQGSKYSSILQALGSIIREEGV 332
           S   +  +S P + + G +  S+LQ LG    ++GV
Sbjct: 809 SHHGLHINSSPSSVQSGQQQQSVLQGLGVQGVQQGV 844


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 217 LDVLKIRFQLQVDLSQINKVQNTVQF 294
           LD+  +++    DLS  N V   VQF
Sbjct: 678 LDLKNMKYTRSADLSSYNCVPINVQF 703


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,307
Number of Sequences: 438
Number of extensions: 3643
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)