Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1447
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 30 0.30
SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom... 29 0.70
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 28 1.2
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 27 2.8
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 26 5.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.0
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 26 6.6
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 26 6.6
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 26 6.6
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 8.7
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = -2
Query: 713 ILTHISDVYNIFIAVIVYVVCLSFTQH*NNKQHDNMLHSNHV 588
I H++ + IFI+ +++VV + F +H N+K+ ++ S+ +
Sbjct: 440 IAGHLTSLIAIFISTVLHVVNIFFLKHQNSKKQKSLASSSTI 481
>SPCC1442.14c |||adenosine
5'-monophosphoramidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 133
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = +1
Query: 343 PSGWRLVVNNGKDGAQSVYHLHLHVLG------GRQMGWP 444
P + ++ NNG+ Q V H+H H++ G +GWP
Sbjct: 73 PENYNVLQNNGRIAHQFVDHVHFHIIPKPNEEYGLGVGWP 112
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -3
Query: 265 ATLLSTLWNNKKMYWRCGAMSLKARHKSSSYMISALISLDM 143
A L S+ W+ + +Y RC + LK+ K+ + +L+SLD+
Sbjct: 324 AILSSSSWS-QLLYLRCSSCKLKSIPKNVFLSLQSLVSLDL 363
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 223 WRCGAMSLKARHKSSSYMISALISLDMILSNIVGPIVVVVSCALRTSSLYGRFTATAEP 47
W+ + K R +S + +S D +LSN PI +S +L +S F+ P
Sbjct: 191 WKLKSKIHKLRAHGTSLKVGCALSTDDVLSNDFLPISAPISSSLGSSIATFSFSPVGTP 249
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/67 (22%), Positives = 23/67 (34%)
Frame = -3
Query: 271 HPATLLSTLWNNKKMYWRCGAMSLKARHKSSSYMISALISLDMILSNIVGPIVVVVSCAL 92
HP +L + W C K + Y+I L L ++ G C L
Sbjct: 21 HPINILIDNPHQANSRWSCNTSICKPNNSEEQYVILKLDKLALVTDITFGKFHTPHLCNL 80
Query: 91 RTSSLYG 71
+ +YG
Sbjct: 81 KDFIVYG 87
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 334 QRAPSGWRLVVNNGKDG 384
Q+ PSGW L + NG +G
Sbjct: 1137 QKEPSGWWLALKNGAEG 1153
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 560 ILKTVNYNFILKRG*IIETPNFMHLF 483
+LK + +IL G I+E N+ HLF
Sbjct: 767 VLKEADSIYILSNGKIVEKGNYEHLF 792
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2
Query: 131 YCGPDRSGRFVC 96
YCGP+ G++VC
Sbjct: 434 YCGPEADGKYVC 445
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +3
Query: 576 QSTLNMITVQHIIMLFVVLMLSERKTNNIHNDSYKYIVYVTDVCQYSI*YLLYYE 740
+ T +++ ++ + +LF LSE++T N +Y + + QYSI +++ ++
Sbjct: 17 KKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQEATQYSIVFVVVFQ 71
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +3
Query: 18 YPTNIYDLSRGSAVAVKR 71
YP ++YDLSR S+ +V++
Sbjct: 177 YPVDLYDLSRTSSYSVQK 194
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 RLQDAENND-NELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQSVYHLHLHVL 420
RL+D ++ +L + V + + + S + + +G D Q+V H+H+H++
Sbjct: 47 RLKDLTPSELTDLFTSVRKVQQVIEKVFSASASNIGIQDGVDAGQTVPHVHVHII 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,373
Number of Sequences: 5004
Number of extensions: 62409
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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