Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1447
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 58 1e-08
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 46 2e-05
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 31 0.97
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 30 1.7
01_06_0297 + 28296742-28297830 30 2.2
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 29 3.0
11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909... 29 5.2
06_02_0265 - 13586552-13587985 29 5.2
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 29 5.2
11_03_0144 + 10724538-10724753,10726127-10726186 28 6.9
02_05_0609 - 30335054-30335374,30335491-30335870,30336102-303364... 28 6.9
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 28 6.9
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/67 (41%), Positives = 39/67 (58%)
Frame = +3
Query: 90 RRAHETTTTIGPTIFDKIISKEIRADIIYEDDLCLAFNDIAPQRQYIFLLFQSVESKVAG 269
+ A T T GPTIFDKII+KEI ++++YED+ LAF DI PQ L+ + + G
Sbjct: 33 KAAAATADTGGPTIFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPKIRDGLTG 92
Query: 270 CGEQRQR 290
+ R
Sbjct: 93 LDKAEPR 99
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 262 LQDAENNDNELLGHLMLVARSLGAQRA-PSGWRLVVNNGKDGAQSVYHLHL 411
L AE E+LG+L+ A+ + + G+R+V+NNG G +Y LH+
Sbjct: 93 LDKAEPRHVEILGYLLYAAKIVAEKEGIAEGYRVVINNGPKG---LYMLHI 140
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +3
Query: 120 GPTIFDKIISKEIRADIIYEDDLCLAFNDIAPQRQYIFLLFQSVESKVAGCGEQRQR 290
G +FDKII KEI + ++++D+ LAF DI PQ ++ V+ + G + +R
Sbjct: 192 GSQVFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVKDGLTGLSKAEER 248
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 262 LQDAENNDNELLGHLMLVARSLGAQRA-PSGWRLVVNNGKDGA 387
L AE E+LG+L+ VA+ + Q G+R+V+N+G G+
Sbjct: 242 LSKAEERHVEILGYLLYVAKVVAKQEGLEDGYRIVINDGPSGS 284
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 31.1 bits (67), Expect = 0.97
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 304 LMLVARSLGAQRAPSGWRLVVNNGKDGAQSVYHLHLHVLGGRQ 432
L L++ ++ + ++VNNGK Q ++H H+H++ R+
Sbjct: 134 LPLISSAIVKATQCDAFNVLVNNGKVAGQVIFHTHVHLIPRRK 176
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 283 DNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQSVYHLHLHVL 420
D++L+ H++ V R L + AP+ + SV HLHLH L
Sbjct: 79 DHQLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVDHLHLHCL 124
>01_06_0297 + 28296742-28297830
Length = 362
Score = 29.9 bits (64), Expect = 2.2
Identities = 26/79 (32%), Positives = 33/79 (41%)
Frame = +3
Query: 84 EVRRAHETTTTIGPTIFDKIISKEIRADIIYEDDLCLAFNDIAPQRQYIFLLFQSVESKV 263
E RAH +GP +FD EDD C+A+ D P R +F+ F SV V
Sbjct: 173 EALRAHLPVVPVGP-LFDT-------GSGAGEDDDCVAWLDAQPPRSVVFVAFGSV--VV 222
Query: 264 AGCGEQRQRAARSLDAGSP 320
G E + A G P
Sbjct: 223 IGRDETAEVAEGLASTGHP 241
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 311 W*PGHSVPKEL-LQDGVLWLTMAKTELKVFIIYTFMFWVEDRWA 439
W +VP+ L DG+ WL ++ T + I TFM W+++ A
Sbjct: 151 WSEVRNVPESSELVDGIKWLQISTTLIDGLIEPTFMKWIQEEKA 194
>11_04_0258 +
15489733-15490054,15490150-15490339,15490438-15490910,
15501203-15501513
Length = 431
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 262 LQDAENNDNELLGHLMLVARSLGAQRAPSGWRLVVNNGKDGAQS 393
L+DAEN +++G LM QR GW V GK A+S
Sbjct: 111 LEDAENEAAKMIGVLMAPEYGRMLQRLVDGWANRVYEGKLPARS 154
>06_02_0265 - 13586552-13587985
Length = 477
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/74 (31%), Positives = 29/74 (39%)
Frame = +3
Query: 27 NIYDLSRGSAVAVKRPYSDEVRRAHETTTTIGPTIFDKIISKEIRADIIYEDDLCLAFND 206
N +D G VA R RA +GP I D +E CLA+ D
Sbjct: 214 NTFDALEGPGVAALRDGRCLSNRATPPVYCVGPLITDGGAEEERHP--------CLAWLD 265
Query: 207 IAPQRQYIFLLFQS 248
P+R +FL F S
Sbjct: 266 AQPERSVVFLCFGS 279
>01_01_0484 -
3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 28.7 bits (61), Expect = 5.2
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Frame = -3
Query: 340 LFGHRVTGLP-----ASSDLAARCRCSPHPATLLSTLWNNKKMYWRCGAMSLKARHKSSS 176
LF H +T +P A+ D + SPHPA + ++ L + +
Sbjct: 43 LFRHLLTSVPPPLPSAAHDALSSLLASPHPAVAAHAAASVARL--AASRADLLSPELALP 100
Query: 175 YMISALISLDM--ILSNIVGPIVVVVSCALRTSSLYGRFTATAEP 47
+I+ L + + S V + +VSCALR+ S RF P
Sbjct: 101 LLIAPLSASPSPRLASCFVKAVAALVSCALRSGSAASRFPPHDHP 145
>11_03_0144 + 10724538-10724753,10726127-10726186
Length = 91
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 129 IFDKIISKEIRADIIYEDDLCLAFNDIAP 215
+F +II E A +YEDD+CL D P
Sbjct: 59 VFCRIIRGEAPAFKVYEDDVCLCILDSHP 87
>02_05_0609 -
30335054-30335374,30335491-30335870,30336102-30336443,
30336551-30336700,30336781-30336878,30336986-30337045,
30337140-30337211,30337337-30337480,30337584-30337655,
30337767-30337899,30338076-30338181
Length = 625
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 226 YWRCGAMSLKARHKSSSYMISALISLDMILSNIVGPI 116
Y R +L + SSS +S L+ LD+ +N+ GP+
Sbjct: 151 YLRLNNNTLSGAYPSSSANLSQLVFLDLSYNNLSGPV 187
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 28.3 bits (60), Expect = 6.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 599 CATYYHVVCCSNAE*KKDKQHTQ 667
C+TYYH +C S A + + Q+++
Sbjct: 704 CSTYYHAMCASRAGYRMELQYSE 726
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,568,874
Number of Sequences: 37544
Number of extensions: 399447
Number of successful extensions: 1078
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -