Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1447
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08) 54 1e-07
SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36) 50 2e-06
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 32 0.43
SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5) 31 0.99
SB_13397| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_40061| Best HMM Match : PHD (HMM E-Value=0.015) 29 4.0
SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 5.3
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 28 9.2
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6) 28 9.2
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 28 9.2
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 28 9.2
SB_8526| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 28 9.2
SB_53066| Best HMM Match : RR_TM4-6 (HMM E-Value=0.68) 28 9.2
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 28 9.2
SB_35476| Best HMM Match : zf-C2H2 (HMM E-Value=4.3) 28 9.2
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_25901| Best HMM Match : DUP (HMM E-Value=4.5) 28 9.2
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 28 9.2
SB_6963| Best HMM Match : PHD (HMM E-Value=0.054) 28 9.2
SB_3566| Best HMM Match : zf-C2H2 (HMM E-Value=4.3) 28 9.2
>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
Length = 492
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/52 (61%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Frame = +3
Query: 39 LSRGSAVAVKRPY--SDEVRRAHETTTTIG-PTIFDKIISKEIRADIIYEDD 185
L GS K P SDEV +A E T G PTIFDKI+SKEI ADIIYEDD
Sbjct: 34 LLAGSREFCKTPILQSDEVEKAKEAAKTKGEPTIFDKILSKEIPADIIYEDD 85
>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
Length = 432
Score = 50.4 bits (115), Expect = 2e-06
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +3
Query: 120 GPTIFDKIISKEIRADIIYEDDLCLAFNDIAPQ 218
G TIF KII KEI A+I++EDD CLAF DI PQ
Sbjct: 4 GDTIFGKIIRKEIPAEILHEDDQCLAFRDINPQ 36
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/46 (41%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Frame = +1
Query: 259 RLQDAENNDNELLGHLMLVARSLGAQR--APSGWRLVVNNGKDGAQ 390
+L A+++D +LLG L++VAR + A + A G+R+++N+GK+G Q
Sbjct: 51 QLSMADDSDEQLLGRLLIVARKVAAMQNLANDGYRIIINDGKNGGQ 96
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 32.3 bits (70), Expect = 0.43
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Frame = -3
Query: 388 ELRLCHC*PQDAILKELFGHRVTGLPASSDLAARCRCSPHPA-----TLLSTLWNNKK-M 227
+ + C C Q + GH T LP D RC C P+ + T WN
Sbjct: 862 QCKACECYVQGTVSPP--GHDPT-LPFPCDDKGRCTCLPNVSGDKCDTCRPEYWNVASGK 918
Query: 226 YWRCGAMSLKARHKSSSYMISALISLDMILSNIVGPIVVVVSCALRTSS 80
WR GA+ RH + +I +I + +I+ I+ I+++ + T++
Sbjct: 919 VWR-GALKDVERHLHNIIVIFIIIIITIIIIIIIITIIIITAIVAATTT 966
>SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)
Length = 1595
Score = 31.1 bits (67), Expect = 0.99
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 566 QSLSVYIKHDYCATYYHVVCC 628
Q LS Y+ HDYCAT+ CC
Sbjct: 922 QLLSRYLPHDYCATHLPQNCC 942
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 566 QSLSVYIKHDYCATYYHVVCC 628
Q LS Y+ H+YCAT+ + CC
Sbjct: 809 QLLSRYLPHNYCATHLPLNCC 829
>SB_13397| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 513
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -3
Query: 409 GVDDKHFELRLCHC*PQDAILKELFGHRVTGLPASSD---LAARCRCSPHPATLLS--TL 245
G+ + + LRL H P+D+ ++ + H LP D L R CS A T
Sbjct: 134 GISTRRYHLRLSHVLPRDSHIRHAYMH----LPRYEDFLPLGTRLACSDTAAAYTGGCTG 189
Query: 244 WNNKKMYWRCGA 209
W+++ W+ G+
Sbjct: 190 WHDRFPDWKAGS 201
>SB_40061| Best HMM Match : PHD (HMM E-Value=0.015)
Length = 260
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 111 IQRDYCDAWYHTKCCS 126
>SB_33412| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 852
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = -3
Query: 265 ATLLSTLWNNKKMYWRCGAMSLKARHKSSSYMISALISLDMILSNIVGPIVVVVSCA 95
+TLL + +Y C + ++ A H + + +L++ + +L +VGP+V VS A
Sbjct: 77 STLLRNITLGASIYDTCQSQTIGADH-AKDIIKESLLTNNKLLKGVVGPLVSDVSIA 132
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 98 IQCDYCDAWYHTKCCS 113
>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
Length = 404
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 555 QDETSPSQSTLNMITVQHIIMLFVVL---MLSERKTNNIHNDSYKY 683
+DE S + T + V H+ +LF+++ ML+ N H+ S +Y
Sbjct: 190 EDEASVALMTTTSVNVSHLTILFLLISQPMLTTSSWNCSHSPSLRY 235
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 111 IQCDYCDAWYHTKCCS 126
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 67 IQCDYCDAWYHTKCCS 82
>SB_8526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 170 DIGSDLLRYD--LVEYCGPDRSGRFVCSADFVAV 75
DIGSD+ + LVE+ P RS + C A +A+
Sbjct: 92 DIGSDVYSFSMVLVEFAMPSRSAPWQCDASNIAL 125
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 67 IQCDYCDAWYHTKCCS 82
>SB_53066| Best HMM Match : RR_TM4-6 (HMM E-Value=0.68)
Length = 411
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 555 QDETSPSQSTLNMITVQHIIMLFVVL---MLSERKTNNIHNDSYKY 683
+DE S + T + V H+ +LF+++ ML+ N H+ S +Y
Sbjct: 286 EDEASVALMTTTSVNVSHLTILFLLISQSMLTTSSWNCSHSPSLRY 331
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 366 IQCDYCDAWYHTKCCS 381
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 652 IQCDYCDAWYHTKCCS 667
>SB_35476| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)
Length = 243
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 555 QDETSPSQSTLNMITVQHIIMLFVVL---MLSERKTNNIHNDSYKY 683
+DE S + T + V H+ +LF+++ ML+ N H+ S +Y
Sbjct: 118 EDEASVALMTTTSVNVSHLTILFLLISQSMLTTSSWNCSHSPSLRY 163
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 191 IQCDYCDAWYHTKCCS 206
>SB_25901| Best HMM Match : DUP (HMM E-Value=4.5)
Length = 186
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 555 QDETSPSQSTLNMITVQHIIMLFVVL---MLSERKTNNIHNDSYKY 683
+DE S + T + V H+ +LF+++ ML+ N H+ S +Y
Sbjct: 61 EDEASVALMTTTSVNVSHLTILFLLISQSMLTTSSWNCSHSPSLRY 106
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 30 IQCDYCDAWYHTKCCS 45
>SB_6963| Best HMM Match : PHD (HMM E-Value=0.054)
Length = 146
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 584 IKHDYCATYYHVVCCS 631
I+ DYC +YH CCS
Sbjct: 111 IQCDYCDAWYHTKCCS 126
>SB_3566| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)
Length = 323
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +3
Query: 555 QDETSPSQSTLNMITVQHIIMLFVVL---MLSERKTNNIHNDSYKY 683
+DE S + T + V H+ +LF+++ ML+ N H+ S +Y
Sbjct: 119 EDEASVALMTTTSVNVSHLTILFLLISQSMLTTSSWNCSHSPSLRY 164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,192,023
Number of Sequences: 59808
Number of extensions: 478963
Number of successful extensions: 1962
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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