Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1447
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...    85   7e-17
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    30   1.5  
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    30   1.5  
Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 38/64 (59%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
 Frame = +1

Query: 262 LQDAENNDNELLGHLMLVARSLGAQRA-PSGWRLVVNNGKDGAQSVYHLHLHVLGGRQMG 438
           L++A ++D  L+G LM+ A  +  Q    +G+R+VVNNGKDGAQSV+HLHLHVLGGRQ+ 
Sbjct: 67  LENAVDSDAALIGKLMVTASKVAKQLGMANGYRVVVNNGKDGAQSVFHLHLHVLGGRQLQ 126

Query: 439 WPPG 450
           WPPG
Sbjct: 127 WPPG 130



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 126 TIFDKIISKEIRADIIYEDDLCLAFNDIAPQRQYIFLL 239
           T+F KII KEI A II+EDD  LAF+D++PQ    FL+
Sbjct: 21  TLFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLV 58



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 209 STAAPVHFLVIPKRR 253
           S  AP+HFLVIPKRR
Sbjct: 49  SPQAPIHFLVIPKRR 63


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 358 LVVNNGKDGAQSVYHLHLHVLGGR 429
           + V +GKD  Q+V H+H+H+L  R
Sbjct: 376 ICVQDGKDAGQTVPHVHIHILPRR 399


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 358 LVVNNGKDGAQSVYHLHLHVLGGR 429
           + V +GKD  Q+V H+H+H+L  R
Sbjct: 376 ICVQDGKDAGQTVPHVHIHILPRR 399


>Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical
           protein F48F5.4 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 226 YWRCGAMSLKARHKSSSYMISALISLDMILSNIVGPIVVVVSCALRTSSLY 74
           YWR  AM +   H SS+     L+ L  ++  +   I++ +   + T+S+Y
Sbjct: 207 YWRYQAMKILKTHSSSNTSKGTLVLLRFLIKGLNFQILLPMISYIPTTSIY 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,146
Number of Sequences: 27780
Number of extensions: 357885
Number of successful extensions: 885
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)