Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1445
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 38 0.002
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 33 0.053
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 32 0.092
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.37
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.49
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 28 1.1
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.1
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 28 1.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.6
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 2.6
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.5
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.5
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 26 6.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 6.0
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.0
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.0
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 8.0
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 372 SITFAQLEENINKWTLELEEQERTFINQATQINAWDTLLIANG 500
SI L+E +NKW+ +L Q F Q++ WD L+ NG
Sbjct: 418 SIKHKTLQEILNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNG 460
Score = 33.1 bits (72), Expect = 0.040
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINFG 183
+ST +T SG FG + +T A G + V+ + S T S +S T P+TG +FG
Sbjct: 216 ASTSTTANSGFSFGKPA--TTSAPGSNTTVTPSSSITGTNDSKPAASNTGSAPTTGFSFG 273
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 49 SSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINFGTGTS 195
++ P+ +TG FG +A T + A +S T S G +FG S
Sbjct: 161 TTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGKPAS 209
Score = 26.2 bits (55), Expect = 4.6
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFG----VSSAPST---QATALSFGVSSATTQPP 162
+ST ++ +S FG ++ +T FG SA ST S +ATT P
Sbjct: 78 NSTNASTSSPFSFGSTNTNNTAGAKPLFGGLGSTGSANSTGDKSKNTASSATGAATTNPS 137
Query: 163 STGINFGTGTS 195
+ NFG+ +
Sbjct: 138 GSTFNFGSSNN 148
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 32.7 bits (71), Expect = 0.053
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPS------TQATALSFGV-SSATTQPP 162
++T + ++G F S+A ST A G + PS +QA A G S+ + PP
Sbjct: 1045 TATNNPPSTGFTFTPSNAGSTAAPMFGAGNTPNPSGSINNASQAFAFGSGEPSNPASNPP 1104
Query: 163 STGINFGTGT 192
STG +FG T
Sbjct: 1105 STGFSFGAAT 1114
Score = 29.1 bits (62), Expect = 0.65
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Frame = +1
Query: 28 SGLGFGVSSAP--------STQATGLSFGVSSAPSTQATA-LSFG--VSSATTQPPSTGI 174
SG FG +++P ST A +F + T A FG ++AT PPSTG
Sbjct: 996 SGFSFGANNSPQPASMFGTSTPAPSSAFAFGNQSGTNPAAPAGFGGITNTATNNPPSTGF 1055
Query: 175 NF 180
F
Sbjct: 1056 TF 1057
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVS-SAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPS---TG 171
S+T T + G S SAP+ + SFG S++ + + T P S +G
Sbjct: 938 SATSKTTSEGTAPAASASAPAPTTSAFSFGASNSSMNKEENTPMAKDAGDTAPASGFKSG 997
Query: 172 INFGTGTS 195
+FG S
Sbjct: 998 FSFGANNS 1005
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 16 STQTSGLGFGVSSAPSTQ--ATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINFGTG 189
++Q G G S P++ +TG SFG AT +F +SA+ P GI F G
Sbjct: 1085 ASQAFAFGSGEPSNPASNPPSTGFSFGA-------ATPSAFN-ASASQSPAPNGIQFNLG 1136
Query: 190 TS 195
+S
Sbjct: 1137 SS 1138
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 31.9 bits (69), Expect = 0.092
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +1
Query: 16 STQTSGLGFGVSSAPSTQATGLSFGVSSA--PSTQATALSFGVSSATTQPPSTGINFGTG 189
+ T+ G + + PST GL FG ++A PST + L FG S+ Q ++ NFGTG
Sbjct: 562 NANTTNTGGSLFNKPSTTTGGL-FGNTTAQQPSTTTSGL-FGASNTNNQAQTS--NFGTG 617
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 49 SSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINFG 183
S+ ++ SFG ++ +T+ + FG S TT P S G +FG
Sbjct: 425 STFGGNNSSNFSFGANNNAATKPSGFGFG--STTTTPASGGFSFG 467
Score = 29.1 bits (62), Expect = 0.65
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = +1
Query: 13 PSTQTSGLGFGVSSA--PSTQATGLSFGVSSAPSTQATALSFG 135
PST T GL FG ++A PST +GL FG S+ + QA +FG
Sbjct: 576 PSTTTGGL-FGNTTAQQPSTTTSGL-FGASNT-NNQAQTSNFG 615
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 16 STQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINFGTGTS 195
+T T G GFG+SS TG+ FG S+ P+ FG ++ T P G+ FG+ T+
Sbjct: 74 TTTTGGTGFGMSSG-----TGM-FGQSNTPA-------FGGTNNATNPSGGGL-FGSNTA 119
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTG 171
S+ +S FG ++ +T+ +G FG S+ + + SFG ++ P+ G
Sbjct: 425 STFGGNNSSNFSFGANNNAATKPSGFGFG-STTTTPASGGFSFGQNANNAPKPAFG 479
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 31 GLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINFGTGTS 195
GLG G ++ +T ATG + +T + + FG SA + P TG+ T T+
Sbjct: 496 GLGAGANTNTATNATGTGGSLFGNANTAGSNM-FG--SANSSTPGTGLFGSTQTN 547
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 29.9 bits (64), Expect = 0.37
Identities = 24/64 (37%), Positives = 31/64 (48%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGINFG 183
S+T + Q S L VSS PST A G S P T +L+ GV P +TG N
Sbjct: 54 SNTSTNQISSLKVDVSSPPST-APG---SAGSTPKTTPVSLNAGV-----PPSNTGANIT 104
Query: 184 TGTS 195
T ++
Sbjct: 105 TNSN 108
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.49
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 19 TQTSGLGFGVSSAPSTQATGLSFGVSSA--PSTQATALSFGVSSATTQPPSTGINFGTGT 192
+ +S + SS S+ T +S G+SS+ PST ++ S +SS+T+ P ST ++ + +
Sbjct: 540 SSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSI-LSSSTSSPSSTSLSISSSS 598
Query: 193 S 195
+
Sbjct: 599 T 599
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGV----SSAPSTQATALSFGVSSATTQPPST 168
S+ PST +S + S+P T S + SS S+ T +S G+SS++ PST
Sbjct: 516 SAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSI--PST 572
Score = 26.2 bits (55), Expect = 4.6
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPST 168
SS PST +S SS S +T LS SS ST SSA+T PS+
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSST--------FSSASTSSPSS 613
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGI 174
S S +S L G S+ PST ++ S + S+P T + S + ++++ S+ I
Sbjct: 501 SEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSI 557
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Frame = +2
Query: 485 TNSERREDVELNE-----AVETVKNEQQSLEHELDFVLAQQKELEDLLGPMEKQLLQENN 649
T +R E+ E++E A+ K + + E E DF + + +G +Q EN+
Sbjct: 711 TKVDRDEEGEIDEDEVWKALVDSKPQLEMDEEESDFDSEEMDKAMTDMGSDSEQSADEND 770
Query: 650 DRIKDPERGPMYSLAENL 703
+ E PM+S ENL
Sbjct: 771 NESMASEEKPMFSDEENL 788
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = +2
Query: 458 YPD*CLGHITNSERREDVELNEAVETVKNEQQSLEHELD 574
YP+ LG + N+ ++ +++ V ++ + ++ E+ELD
Sbjct: 259 YPNTFLGELFNAAKQTSDSIDDIVAQIQEDDENFENELD 297
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +1
Query: 40 FGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQP 159
FGVS PS A+ G+SS S A + V S TTQP
Sbjct: 329 FGVSLPPSL-ASPEKGGISSTTSVSPAAQASPVLSTTTQP 367
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPST-QATALSFGVSSATTQPPSTGINF 180
S+TP++ + S+A S AT S SS ST ATA S +SS +T +
Sbjct: 169 SATPTSSATSSSLS-STAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSL 227
Query: 181 GTGT 192
+ +
Sbjct: 228 ASSS 231
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATAL--SFGVSSATTQPPSTGIN 177
SSTP T ++ L +S P T ++ L+ SS P T +TAL S ++S++ ST I
Sbjct: 500 SSTPITSSTALN---TSTPITSSSVLN---SSTPITSSTALNTSTSITSSSVLNSSTPIT 553
Query: 178 FGT 186
T
Sbjct: 554 SST 556
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATAL--SFGVSSATTQPPSTGIN 177
SSTP T ++ L +S P T ++ L+ SS P T +TAL S ++S++ ST I
Sbjct: 2612 SSTPITSSTALN---TSTPITSSSVLN---SSTPITSSTALNTSTSITSSSVLNSSTPIT 2665
Query: 178 FGT 186
T
Sbjct: 2666 SST 2668
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATAL--SFGVSSATTQPPSTGIN 177
SSTP T ++ L +S P T ++ L+ SS P T +TAL S ++S++ ST I
Sbjct: 2936 SSTPITSSTALN---TSTPITSSSVLN---SSTPITSSTALNTSTSITSSSVLNSSTPIT 2989
Query: 178 FGT 186
T
Sbjct: 2990 SST 2992
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATAL--SFGVSSATTQPPSTGIN 177
SSTP T ++ L +S P T ++ L+ SS P T +TAL S ++S++ ST I
Sbjct: 1748 SSTPITSSTALN---TSTPITSSSVLN---SSTPITSSTALNTSTPITSSSVLNSSTPIT 1801
Query: 178 FGT 186
T
Sbjct: 1802 SST 1804
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATAL--SFGVSSATTQPPSTGIN 177
SSTP T ++ L +S P T ++ L+ SS P T +TAL S ++S++ ST I
Sbjct: 1844 SSTPITSSTALN---TSTPITSSSVLN---SSTPITSSTALNTSTPITSSSVLNSSTPIT 1897
Query: 178 FGT 186
T
Sbjct: 1898 SST 1900
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATAL--SFGVSSATTQPPSTGIN 177
SSTP T ++ L +S P T ++ L+ SS P T +TAL S ++S++ ST I
Sbjct: 2036 SSTPITSSTALN---TSTPITSSSVLN---SSTPITSSTALNTSTPITSSSVLNSSTPIT 2089
Query: 178 FGT 186
T
Sbjct: 2090 SST 2092
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Frame = -3
Query: 702 KFSASEYIGPLSGSLIRSLFSCSN----------CFSIGPNRSSNSFCCAS 580
KF+A E+ P +L+ SC++ C+S+ P R S +FCC S
Sbjct: 1222 KFNAHEFSSPSEKTLVNHCNSCNSTTSNTRICEKCYSLVP-RMSCTFCCLS 1271
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPS 165
SST S+ +S + S PST AT +S+P T +A S + TT P S
Sbjct: 284 SSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPIT-TSAPSLSSALPTTYPSS 336
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +1
Query: 4 SSTPSTQTS-GLGFGVSSAPSTQAT-GLSF-GVSSAPSTQATALSFGVSSATTQPPSTGI 174
S P++ +S L V+SA + A G+S VSSA ++ + +S VSSAT+ S+ I
Sbjct: 217 SYVPTSSSSIALSSVVASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTI 276
Query: 175 NFGTGTS 195
+ T +S
Sbjct: 277 SSATSSS 283
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 4 SSTPSTQTSGLGF-GVSSAPSTQATGLSFGVSSAPSTQA--TALSFGVSSATTQPPSTGI 174
S++ S G+ VSSA ++ + +S VSSA S A T S SSA+ P S+ +
Sbjct: 234 SASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSV 293
Query: 175 N 177
+
Sbjct: 294 S 294
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGIN 177
SS SG+ V+ PS + ++ + A SFG+++ T+P +TG N
Sbjct: 364 SSLTGNAKSGIDSSVTGMPSDNYARVVESSTAEFFDPSLASSFGLTNYRTKPLTTGFN 421
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 13 PSTQTSGL-GFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTG-INFGT 186
PS + S L ++S+PS L + S+P + +LS + S TT+ +G +N T
Sbjct: 136 PSQEISTLLSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSSLPSLTTKSNLSGNLNMVT 195
Query: 187 GTS 195
S
Sbjct: 196 PAS 198
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 215 VPKVNPADVPVPKLIPVLGG 156
VP PA +PVP P++GG
Sbjct: 741 VPTPAPAPIPVPPPAPIMGG 760
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPST 168
SSTPS+ +S SS+ S ++ SS+ S+++++ S S +++ S+
Sbjct: 151 SSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSS 205
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +1
Query: 1 VSSTPSTQTSGLGFGVSSAP------STQATGLSFGVSSAPSTQATALSFGVSSATTQPP 162
++ST +S G VS+A S+ A+ + VSS S+ ++ALS SSA+
Sbjct: 227 ITSTTPASSSSSGAIVSNAKTASTDDSSSASSATSSVSSVVSSASSALSASASSASASVS 286
Query: 163 ST 168
S+
Sbjct: 287 SS 288
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 4 SSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSATTQPPSTGIN 177
S+ S+ S VSS S+ ++ LS SSA ++ +++ S S A TGIN
Sbjct: 249 STDDSSSASSATSSVSSVVSSASSALSASASSASASVSSSASSDASPAL----KTGIN 302
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 1 VSSTPSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATAL-SFGVSSA 147
VSS S+ +S L SSA ++ ++ S S A T AL + GV SA
Sbjct: 263 VSSVVSSASSALSASASSASASVSSSASSDASPALKTGINALVAVGVVSA 312
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 19 TQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSAT-TQPPSTGINFGTGTS 195
+ TSG G SSA ST A+ S S+ S+ ++++S +SA+ + S+G + G+ ++
Sbjct: 425 SSTSGSSSGSSSA-STTASSSSVSSGSSISSGSSSMSTSYTSASGSSAHSSGSSSGSSSA 483
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/77 (22%), Positives = 40/77 (51%)
Frame = +2
Query: 473 LGHITNSERREDVELNEAVETVKNEQQSLEHELDFVLAQQKELEDLLGPMEKQLLQENND 652
L + + R ++ + EA+ +++ E+ +++ +L + +++ + L +EK L+ ++
Sbjct: 679 LESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLALEKLNDLEKSLVL--SE 736
Query: 653 RIKDPERGPMYSLAENL 703
R KD SL E L
Sbjct: 737 RSKDELDESYKSLQEQL 753
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 515 LNEAVETVKNEQQSLEHELDFVLAQQKELEDLLGPMEKQLLQENND 652
L EA+ETVKN++++L + KE L E + ++D
Sbjct: 348 LQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEALISHYDDD 393
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +1
Query: 4 SSTPS-TQTSGLGFGVSSAPSTQATGLS----FGVSSAPSTQATALSFGVSSATTQPPST 168
SS PS + TS F ++ ST ++ LS SS+PS+ +++ S +T+ PST
Sbjct: 184 SSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPST 243
Query: 169 GINFGTGTS 195
+ + +S
Sbjct: 244 SSSSSSTSS 252
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 16 STQTSGLGFGVSSAPS--TQATGLSFGVSSAPSTQATALSFGVSSATTQPPST 168
S TS + S PS + + F S PST T S +S ++QPP T
Sbjct: 270 SPSTSSVATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAYSASVSSQPPLT 322
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +1
Query: 13 PSTQTSGLGFGVSSAPSTQATGLSFGVSSAPSTQATALSFGVSSA 147
P T T GL S +P TQA S V ST+ + VSSA
Sbjct: 664 PKTNTEGLMHAQSVSPITQAM-KSANVLEGSSTRLNSYEPSVSSA 707
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,177
Number of Sequences: 5004
Number of extensions: 49484
Number of successful extensions: 248
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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