Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1445
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 497 RREDVELNEAVETVKNEQQSLEHEL--DFVLAQQKELEDLLGPMEKQLLQENNDRIKDPE 670
           R  D+ +NE   T++NEQ +  ++   +++  + K++   +    K    EN   +K+ E
Sbjct: 432 RNNDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTE 491


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 201  INLRNENCYHDRCFFRTITT 260
            ++LR+EN YH+  F  T+ T
Sbjct: 1105 LSLRDENRYHEDIFGITLRT 1124


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 482 ITNSERREDVELNEAVETV 538
           I  S RR+ V+LNE V  V
Sbjct: 250 IEGSSRRQPVQLNERVRQV 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,383
Number of Sequences: 438
Number of extensions: 3401
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)