Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1444
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...    81   1e-16
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.1  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   2.6  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    27   2.6  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    27   2.6  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    27   3.4  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   7.9  

>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 36/84 (42%), Positives = 56/84 (66%)
 Frame = +2

Query: 257 NLCTKDSYDYLKTLASDVHVVRGDFDENATYPEQKVVTVGQFRIGLIHGHQVVPWGDEES 436
           NL +   Y+YLK + SD+ +V+G FD ++  P    +T+G F+IG  +GH VVP    E+
Sbjct: 39  NLTSTSVYEYLKHVCSDLKLVKGAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEA 98

Query: 437 LALIQRQLDVDILISGHTHRFEAY 508
           L+++ R++D DIL+ G TH+F AY
Sbjct: 99  LSILAREMDADILLFGGTHKFAAY 122



 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
 Frame = +1

Query: 523 FYINPGSATGG--YSPLYRDP--TPSFVLMDIQSSTVVTYVYKLLGDEVKVERIEY 678
           F++NPGSATG    S +  D    PSFVLMD+Q + ++ YVY++   EV+VE+++Y
Sbjct: 128 FFVNPGSATGAPNVSAVEDDEKIVPSFVLMDVQGAVLILYVYRIFDGEVRVEKMQY 183



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = +3

Query: 144 MLVLVLGDLHIPHRCSSLPAKFKKLLLPGRIQHILC 251
           MLVLV+GD HIP R   L  KF++LL+PG+I  I+C
Sbjct: 1   MLVLVIGDFHIPDRAPKLSEKFRQLLIPGKISQIIC 36


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 645 EELVNVGDHCRTLNVHQHKRRSRIPV*RAVTSSS*TRIDIELILV 511
           E+ + +  H RTLN  +HK  SRI V +  T +     D ++ L+
Sbjct: 448 EKNLELNPHPRTLNATEHKINSRIQVSKLNTKNELANADPKMYLL 492


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 380 FRIGLIHGHQVVPWGDEESLALIQRQLDVDILISGHTH 493
           F IG   GH ++  G   SL L ++Q   + LIS + H
Sbjct: 250 FVIGAYSGHHLLGQGQASSLNLAEQQAAYNSLISYYIH 287


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 296 KSSNNHRSLLYISFSTQYMLYPSR*KQLLELS 201
           KS+ + ++LL I F T    YP   K LLEL+
Sbjct: 7   KSTASSKTLLIIKFDTNSSRYPFYKKHLLELN 38


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 114 LYKRTNIPYKMLVLVLGDLHIPHRCSSLPAKF 209
           L K   +PYK +V +LG+ H  H   S+P  F
Sbjct: 307 LLKGEKLPYK-IVTILGNAHAMHVIISVPPSF 337


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 599 ISTNEGVGSLYKGL*P 552
           I TNEG G+LY+GL P
Sbjct: 166 IVTNEGFGTLYRGLAP 181


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 259 VSVHNICCILPGRSNFLNLAGKLLH 185
           +S+  +CC LP +S+     G+LL+
Sbjct: 119 LSLGEMCCFLPNQSSITMYTGRLLN 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,574
Number of Sequences: 5004
Number of extensions: 66783
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)