Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1444
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0364 - 9457747-9458043,9459815-9459952,9460072-9460141,946...   133   1e-31
03_04_0196 - 18365840-18366701,18366875-18366950,18366989-183672...    29   3.5  
01_05_0039 - 17486716-17487855                                         29   3.5  
04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859     28   6.2  
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565...    28   6.2  
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376...    28   8.2  
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373...    28   8.2  

>02_02_0364 -
           9457747-9458043,9459815-9459952,9460072-9460141,
           9460928-9460995,9462451-9462582
          Length = 234

 Score =  133 bits (322), Expect = 1e-31
 Identities = 53/81 (65%), Positives = 72/81 (88%)
 Frame = +2

Query: 266 TKDSYDYLKTLASDVHVVRGDFDENATYPEQKVVTVGQFRIGLIHGHQVVPWGDEESLAL 445
           TK+ +DYLK+L  D+H+ RG++DE+A YPE K +T+GQF++GL HGHQVVPWGD +SLA+
Sbjct: 89  TKEVHDYLKSLCPDLHITRGEYDEDARYPETKTLTIGQFKLGLCHGHQVVPWGDLDSLAM 148

Query: 446 IQRQLDVDILISGHTHRFEAY 508
           +QRQLDVDIL++GHTH+F+AY
Sbjct: 149 LQRQLDVDILVTGHTHQFKAY 169



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 32/57 (56%), Positives = 40/57 (70%)
 Frame = +1

Query: 508 QHENKFYINPGSATGGYSPLYRDPTPSFVLMDIQSSTVVTYVYKLLGDEVKVERIEY 678
           +HE    INPGSATG YS +  D  PSFVLMDI    VV YVY+L+  EVKV++I++
Sbjct: 170 KHEGGVVINPGSATGAYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDF 226



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 26/37 (70%), Positives = 33/37 (89%)
 Frame = +3

Query: 144 MLVLVLGDLHIPHRCSSLPAKFKKLLLPGRIQHILCT 254
           +LVL LGDLH+PHR + LPAKFK +L+PG+IQHI+CT
Sbjct: 2   VLVLALGDLHVPHRAADLPAKFKSMLVPGKIQHIICT 38


>03_04_0196 -
           18365840-18366701,18366875-18366950,18366989-18367237,
           18367819-18367837
          Length = 401

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 383 RIGLIHGHQVVPWGDEESLALIQRQLDVDILISGHTHRFEAYNTRI 520
           R+G+I G Q+        ++ ++  +D   L+ GHTH+ E  NT +
Sbjct: 196 RLGVIQGDQIA------YISTVRSYVDEAYLVQGHTHKHEPDNTLV 235


>01_05_0039 - 17486716-17487855
          Length = 379

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = +3

Query: 144 MLVLVLGDLHIPHRC--SSLPAKFKKLLLPGRIQHILCTETYVQKTPMII*RLWPVMCML 317
           +L LV+G  ++ + C  S LP     LLL  ++   L     + + P+       V+ + 
Sbjct: 120 LLGLVMGLNNLLYSCGTSYLPVSTTALLLSMQLAFTLALAAALVRVPLSFANFNAVVLLT 179

Query: 318 LGEILMRMRHIQSRKSSQLDSSALD*FMDTK*SLGA 425
           L  +L+ +RH         D+++ D  +    +LGA
Sbjct: 180 LSSLLLALRHGAGGGGGGADATSPDYLVGVAATLGA 215


>04_04_0655 + 26974366-26974398,26974480-26974899,26975023-26975859
          Length = 429

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = -1

Query: 471 MSTSSCLCIKARDSSSPQGTTW----CP*ISPMRNCPTVTTF--CSGYVAFSSKSPL 319
           +ST + + +KA+ S   + T W     P  S   +  + TT   CS   +FSS SPL
Sbjct: 223 LSTEALVPVKAKRSKRSRATAWSLSGAPPFSDSTSSSSTTTTSSCSSSASFSSFSPL 279


>03_05_1149 +
           30753463-30754695,30754834-30755017,30755321-30756549,
           30756702-30756816,30757126-30758084
          Length = 1239

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -3

Query: 409 LVSMNQSNAELSNCDDFLLWICRILIKISPNNMHITGQSLQI 284
           ++  NQS  +L+ CDD   WI  I +  +P  +H+ G++ +I
Sbjct: 396 MLETNQSLLQLAICDDVNPWIEEIDLHETP--LHVAGKTREI 435


>07_01_0505 -
           3759254-3759490,3759846-3759989,3760135-3760347,
           3760439-3760990,3761339-3761806,3761959-3762023,
           3762133-3762265,3763798-3764022
          Length = 678

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 349 SRAESRHSWTVPHWTDSWTPSSPLG 423
           S+ +SR+  T PH     TP+SPLG
Sbjct: 283 SKGQSRNQNTYPHLMGLQTPTSPLG 307


>01_01_0513 +
           3736893-3737047,3737298-3737340,3737631-3737765,
           3737879-3738010,3738129-3738278,3738353-3738373,
           3738468-3738675,3738796-3738877,3738983-3739088,
           3739245-3739358,3739458-3739685
          Length = 457

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 328 ISPNNMHITGQSLQIIIGVFCT*VSVHNICCILPGRS 218
           +S  N+H+T  + + +    C+ V VHN+  + PG S
Sbjct: 222 LSVTNIHLTNSADKHMTVYRCSQVHVHNVTIVAPGDS 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,849,869
Number of Sequences: 37544
Number of extensions: 417535
Number of successful extensions: 1011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)