Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1444
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47357-7|CAD90185.1|  191|Caenorhabditis elegans Hypothetical pr...   125   3e-29
Z47357-6|CAA87426.2|  187|Caenorhabditis elegans Hypothetical pr...   125   3e-29
Z68217-7|CAA92469.2|  301|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF038621-2|AAK71385.1|  329|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    23   8.4  
Z78019-5|CAB01455.1|  305|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68006-5|CAE17869.1|   97|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U21302-2|AAA92287.1|  305|Caenorhabditis elegans RNP-1 protein.        27   9.8  

>Z47357-7|CAD90185.1|  191|Caenorhabditis elegans Hypothetical
           protein ZK1128.8b protein.
          Length = 191

 Score =  125 bits (302), Expect = 3e-29
 Identities = 52/84 (61%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
 Frame = +2

Query: 257 NLCTKDSYDYLKTLASDVHVVRGDFD-ENATYPEQKVVTVGQFRIGLIHGHQVVPWGDEE 433
           NLC+++++DYL+TL+SDVH+VRG+FD E   YP+ KVVTVGQFRIG+ HGHQ++PWGD+ 
Sbjct: 43  NLCSRETFDYLRTLSSDVHIVRGEFDDETLKYPDTKVVTVGQFRIGVCHGHQIIPWGDQR 102

Query: 434 SLALIQRQLDVDILISGHTHRFEA 505
            L L+ RQLDVDIL++G+T+   A
Sbjct: 103 MLELLARQLDVDILVTGNTYECSA 126



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 29/59 (49%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
 Frame = +1

Query: 505 LQHENKFYINPGSATGGYSPLYRDPT-PSFVLMDIQSSTVVTYVYKLLGDEVKVERIEY 678
           ++   +F+++PGSATG +S    +PT PSF L+D+Q+  VVTY+Y+L+ D VKV+RI Y
Sbjct: 127 VEKNGRFFVDPGSATGSFSVTKTEPTTPSFALLDVQADNVVTYLYRLIDDAVKVDRIIY 185



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 19/36 (52%), Positives = 31/36 (86%)
 Frame = +3

Query: 147 LVLVLGDLHIPHRCSSLPAKFKKLLLPGRIQHILCT 254
           LVL++GD ++PHR +++  KF+KLL+P ++QH+LCT
Sbjct: 6   LVLLIGDFNLPHRAANISPKFRKLLVPNKMQHVLCT 41


>Z47357-6|CAA87426.2|  187|Caenorhabditis elegans Hypothetical
           protein ZK1128.8a protein.
          Length = 187

 Score =  125 bits (302), Expect = 3e-29
 Identities = 52/84 (61%), Positives = 71/84 (84%), Gaps = 1/84 (1%)
 Frame = +2

Query: 257 NLCTKDSYDYLKTLASDVHVVRGDFD-ENATYPEQKVVTVGQFRIGLIHGHQVVPWGDEE 433
           NLC+++++DYL+TL+SDVH+VRG+FD E   YP+ KVVTVGQFRIG+ HGHQ++PWGD+ 
Sbjct: 39  NLCSRETFDYLRTLSSDVHIVRGEFDDETLKYPDTKVVTVGQFRIGVCHGHQIIPWGDQR 98

Query: 434 SLALIQRQLDVDILISGHTHRFEA 505
            L L+ RQLDVDIL++G+T+   A
Sbjct: 99  MLELLARQLDVDILVTGNTYECSA 122



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 29/59 (49%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
 Frame = +1

Query: 505 LQHENKFYINPGSATGGYSPLYRDPT-PSFVLMDIQSSTVVTYVYKLLGDEVKVERIEY 678
           ++   +F+++PGSATG +S    +PT PSF L+D+Q+  VVTY+Y+L+ D VKV+RI Y
Sbjct: 123 VEKNGRFFVDPGSATGSFSVTKTEPTTPSFALLDVQADNVVTYLYRLIDDAVKVDRIIY 181



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 20/37 (54%), Positives = 32/37 (86%)
 Frame = +3

Query: 144 MLVLVLGDLHIPHRCSSLPAKFKKLLLPGRIQHILCT 254
           MLVL++GD ++PHR +++  KF+KLL+P ++QH+LCT
Sbjct: 1   MLVLLIGDFNLPHRAANISPKFRKLLVPNKMQHVLCT 37


>Z68217-7|CAA92469.2|  301|Caenorhabditis elegans Hypothetical
           protein F58G6.2 protein.
          Length = 301

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/80 (28%), Positives = 38/80 (47%)
 Frame = +2

Query: 437 LALIQRQLDVDILISGHTHRFEAYNTRISSISILVQLLEVTALYTGILLLRLC*WTFRVR 616
           L  I  Q D   LI       E  NT    +S +  L  +  ++  I+++ LC +TF  +
Sbjct: 132 LEKIAEQGDTAFLIVTVRLTIEDTNT-FQLLSQICTLFILIVMFISIIIVILC-YTFIQK 189

Query: 617 QWSPTFTSSSVMKSKLKELN 676
           Q    F++SS+ K   ++LN
Sbjct: 190 QMKTRFSASSITKKSQEQLN 209


>Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical
           protein F55G7.4 protein.
          Length = 190

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -1

Query: 483 PDIRMSTSSCLCIKARDSSSPQGTTWCP*ISPMRNCPTVTTFCSGYVAFSSKSPLT 316
           P IR STSSCL    ++S +     + P I+  RN PT     S   + +SK+  T
Sbjct: 130 PKIRRSTSSCLRSSKKESLNKNLEKYKPDINTERNNPTSGESLSNRKSKNSKTLFT 185


>AF038621-2|AAK71385.1|  329|Caenorhabditis elegans Hypothetical
           protein M116.4 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 440 LETLHRPKGLLGVHESVQCGTVQL 369
           LE  HRPK  L +H +++C T+ +
Sbjct: 114 LEIFHRPKVKLSLHNTIRCETMNI 137


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 590 NEGVGSLYKGL*PPV 546
           NEG+G  YKG+ PP+
Sbjct: 54  NEGIGGFYKGILPPI 68


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 23.4 bits (48), Expect(2) = 8.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 201 LASCCICEECEDPRGQVPTFCMVYLYAYTVKSSCI 97
           +A   I +  EDP+       +V+L  Y   S+C+
Sbjct: 276 VADMLIMDPTEDPKTGRQLLVLVFLLGYMTISACV 310



 Score = 22.6 bits (46), Expect(2) = 8.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 360 FCSGYVAFSSKSPLTTCTSLAK 295
           FC GY  F     L T   LAK
Sbjct: 253 FCVGYAIFGIPLTLVTIADLAK 274


>Z78019-5|CAB01455.1|  305|Caenorhabditis elegans Hypothetical
          protein ZK863.7 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 2  SNLSSVFQIF-KTLICDIVKNYYF 70
          + L  VFQ F K   CDIVKNY F
Sbjct: 17 NKLKQVFQPFCKVTECDIVKNYAF 40


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/66 (21%), Positives = 27/66 (40%)
 Frame = -2

Query: 494  DACALISGCPHPAASVSKLETLHRPKGLLGVHESVQCGTVQL*RLSALDMSHSHQNLP*Q 315
            +A   +   P P    +K+ T   P  +L    ++   + +   +S       +Q+ P +
Sbjct: 1554 NASLSLPASPPPNTETTKVNTTVIPSDVLATRMTMSQSSTKSSNVSVSSRHRDNQSAPPR 1613

Query: 314  HAHHWP 297
            H HH P
Sbjct: 1614 HHHHQP 1619


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/66 (21%), Positives = 27/66 (40%)
 Frame = -2

Query: 494  DACALISGCPHPAASVSKLETLHRPKGLLGVHESVQCGTVQL*RLSALDMSHSHQNLP*Q 315
            +A   +   P P    +K+ T   P  +L    ++   + +   +S       +Q+ P +
Sbjct: 1715 NASLSLPASPPPNTETTKVNTTVIPSDVLATRMTMSQSSTKSSNVSVSSRHRDNQSAPPR 1774

Query: 314  HAHHWP 297
            H HH P
Sbjct: 1775 HHHHQP 1780


>Z68006-5|CAE17869.1|   97|Caenorhabditis elegans Hypothetical
           protein K09C8.7 protein.
          Length = 97

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 177 ECEDPRGQVPTFCMVYLYAYTVKSSC 100
           +C DP G  P  CM + Y Y     C
Sbjct: 67  KCMDPEGYCPGKCMNFRYTYNTLYDC 92


>U21302-2|AAA92287.1|  305|Caenorhabditis elegans RNP-1 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 2  SNLSSVFQIF-KTLICDIVKNYYF 70
          + L  VFQ F K   CDIVKNY F
Sbjct: 17 NKLKQVFQPFCKVTECDIVKNYAF 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,560,498
Number of Sequences: 27780
Number of extensions: 375307
Number of successful extensions: 986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)