Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1443
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    66   6e-12
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    30   0.36 
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   2.5  

>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 66.1 bits (154), Expect = 6e-12
 Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
 Frame = +1

Query: 28  ILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFSE--LEKMEYLPVKV 201
           +L  +P+ +F LG+WQV R +WK+G+I+ +  +     I +PK  +E   +K+E+  V +
Sbjct: 42  LLSAVPIVTFALGTWQVKRREWKMGIINTLTERLQQPAILLPKTVTEQDTKKLEWTRVLL 101

Query: 202 KGEFLHEKEILIGPR 246
           +G F H++E+L+GPR
Sbjct: 102 RGVFCHDQEMLVGPR 116



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +3

Query: 315 GWLVITPFKLADTGEVILINRGWIHQNLRPKEKREP-SLIKGPVELTGVVRLTEKRAPFM 491
           G+ V+TPF L D G  IL+NRGWI ++   +  R+P SL KGPV + G++R    +  FM
Sbjct: 123 GYHVVTPFIL-DDGRRILVNRGWIARSFAEQSSRDPSSLPKGPVVIEGLLRQHTDKPRFM 181

Query: 492 PKNNPEK 512
            KN PEK
Sbjct: 182 MKNEPEK 188



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +2

Query: 608 GWPIPNQTRVTLRNEHFSYIVTWYSLFAFTSIMWHRFFIR 727
           G P+ +  +V + N H  YI+TWYSL   ++IM + +F R
Sbjct: 229 GLPLGHPLKVEIFNSHTEYIITWYSLSVVSAIMLYVYFKR 268


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 291 VSDP--KKNQGWLVITPFKLADTGEVILINRGWIHQNLRPKEKREPSLIKGPVEL 449
           V++P   K+ GW+ +  +   DT +   + R +    + PK  R   L+K PV++
Sbjct: 510 VNEPIYSKSDGWIPVMVYPFIDTKQTPFMGRAFAVPFIEPKWGRYEILVKKPVKI 564


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 524 YRDLDQMSAHIGC-LPIWLDAKGIPDPPTGWPIPNQT 631
           Y+D D  ++HIGC  P +   K I + P  +  PN T
Sbjct: 573 YQDPDDTNSHIGCDPPGYPTTKYIEEHPLAYKNPNAT 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,621,433
Number of Sequences: 5004
Number of extensions: 78705
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)