Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1443
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525...    39   0.006
07_03_0846 - 21983581-21986055                                         31   1.2  
04_03_0713 - 18977806-18978228                                         30   2.7  
06_03_1143 + 27971561-27972670,27973868-27974458                       29   3.5  
05_01_0333 - 2614123-2614202,2614466-2614553,2614644-2614721,261...    29   3.5  
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    29   6.2  
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914...    28   8.1  

>03_02_0045 -
           5251234-5251305,5251362-5251419,5252256-5252539,
           5252836-5253019,5253564-5253814,5253921-5254024,
           5254143-5254281
          Length = 363

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
 Frame = +1

Query: 52  SFTLGSWQVYRWQWKLGLIDMMQAKSNAVPID----MPKDFS---ELEKMEYLPVKVKGE 210
           +F LGSWQ++R Q K+ ++D    +    PI      P D S   +    E+  +  +G+
Sbjct: 67  TFGLGSWQLFRRQEKIEMLDYRTRRLEMEPIAWNQMAPSDLSAGVDPATPEFRRIVCEGD 126

Query: 211 FLHEKEILIGPRA 249
           F  E+ + +GPR+
Sbjct: 127 FDEERSVFVGPRS 139



 Score = 34.7 bits (76), Expect = 0.094
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
 Frame = +2

Query: 512 GSWFYRDLDQMSAHIGCLP---IWL-DAKGIPDPPTGWPIPNQTRVTLRN-----EHFSY 664
           G WFY D+  ++   G LP   I++ D      P   +P+P      + +     +H  Y
Sbjct: 259 GQWFYVDVPMIARACG-LPENTIYIEDINEDVSPTNPYPVPKDVSTLIHHSVMPHDHLKY 317

Query: 665 IVTWYSLFAFTSIM 706
            VTWY+L A  + M
Sbjct: 318 TVTWYTLSAAVTFM 331



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 429 IKGPVELTGVVRLTEKRAPFMPKNNPEKAHGF 524
           +K PV + GV+R +EK + F+P N P     F
Sbjct: 231 VKPPVRVLGVIRGSEKPSIFVPANEPSVGQWF 262


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 511 FSGLFLGMKGALFSVNLTTPVSSTGPFIKDGSRFSLG 401
           FS +FL    A+ ++N TTP+S T   +  G RF+LG
Sbjct: 10  FSQIFLCT--AVDTINSTTPLSGTQKIVSKGGRFALG 44


>04_03_0713 - 18977806-18978228
          Length = 140

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 651 NTFRTLSHGILCLHLLVLCGIVSSLESYHYC 743
           N +R  + G LCL +L  C I  ++ S+HYC
Sbjct: 64  NGYRLAATGGLCLDILQPCVISFNVFSFHYC 94


>06_03_1143 + 27971561-27972670,27973868-27974458
          Length = 566

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 581 AKGIPDPPTGWP-IPNQTRVTLRNEHFSYIV 670
           A G+P  P GWP + N  +V L+   F Y+V
Sbjct: 30  ADGLPPGPPGWPVVGNLFQVILQRRPFMYVV 60


>05_01_0333 -
           2614123-2614202,2614466-2614553,2614644-2614721,
           2614795-2614887,2614982-2615101,2615685-2615726,
           2615822-2616091,2617188-2617339,2617771-2618233
          Length = 461

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -3

Query: 505 GLFLGMKGALFSVNLTTPVSSTGPFIKDGS 416
           GLF    GA  ++NLTT VS  G  +K GS
Sbjct: 408 GLFHIRNGARNTINLTTVVSENGEVVKRGS 437


>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 88  QWKLGLIDMMQAKSNAVPIDMPKDFSELEKMEYLP 192
           Q+K G  D     +N V ID+  DF E+E++  LP
Sbjct: 438 QFKNGNADEKNLVNNPVVIDLMDDFLEMERLAALP 472


>03_06_0293 -
           32889813-32890019,32890144-32890301,32891310-32891423,
           32891531-32891777
          Length = 241

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 839 FFFEIKLPILFRADLRYLKINNALTYKLLALFTIMVTF 726
           + F + LP++    LRY    + +   LL LFT+ ++F
Sbjct: 73  YIFLLFLPLIVLCPLRYYHQKHPVNLLLLGLFTVAISF 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,309,497
Number of Sequences: 37544
Number of extensions: 472307
Number of successful extensions: 1318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)