Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1443
         (846 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF182954-1|AAF19610.1|  300|Drosophila melanogaster Surfeit 1 pr...    85   9e-17
AE014296-1167|AAF50632.2|  300|Drosophila melanogaster CG9943-PA...    85   9e-17
AY118815-1|AAM50675.1|  185|Drosophila melanogaster GH23574p pro...    83   6e-16

>AF182954-1|AAF19610.1|  300|Drosophila melanogaster Surfeit 1
           protein.
          Length = 300

 Score = 85.4 bits (202), Expect = 9e-17
 Identities = 36/78 (46%), Positives = 54/78 (69%)
 Frame = +1

Query: 25  WILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFSELEKMEYLPVKVK 204
           W LL+IP T+F LG WQV R  WK  LI  +  + +  P+ +P D ++L +MEY  VK++
Sbjct: 65  WFLLLIPATTFGLGCWQVKRKIWKEQLIKDLNKQLSTAPVALPDDLTDLAQMEYRLVKIR 124

Query: 205 GEFLHEKEILIGPRALMK 258
           G FLH+KE+ +GPR+L++
Sbjct: 125 GRFLHDKEMRLGPRSLIR 142



 Score = 82.6 bits (195), Expect = 6e-16
 Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
 Frame = +2

Query: 509 KGS-WFYRDLDQMSAHIGCLPIWLDAKGIPDPPTGWPIPNQTRVTLRNEHFSYIVTWYSL 685
           KG+ + YRDL +M A  G  P++LDA   P      PI  QTRVTLRN+H SY+VTW+SL
Sbjct: 223 KGNVYLYRDLARMCAATGAAPVFLDAVYDPQTAAHAPIGGQTRVTLRNDHLSYLVTWFSL 282

Query: 686 FAFTSIMWHRFFIRKLP 736
            A TS +W+R  ++++P
Sbjct: 283 SAATSFLWYRQIVKRIP 299



 Score = 62.1 bits (144), Expect = 9e-10
 Identities = 29/71 (40%), Positives = 40/71 (56%)
 Frame = +3

Query: 282 GSLVSDPKKNQGWLVITPFKLADTGEVILINRGWIHQNLRPKEKREPSLIKGPVELTGVV 461
           G L S      G+L++TPF+LAD  +++L+NRGW+ +     E R     +  VELT VV
Sbjct: 150 GGLFSQRDSGNGYLIVTPFQLADRDDIVLVNRGWVSRKQVEPETRPLGQQQAEVELTAVV 209

Query: 462 RLTEKRAPFMP 494
           R  E R  F P
Sbjct: 210 RKGEARPQFTP 220


>AE014296-1167|AAF50632.2|  300|Drosophila melanogaster CG9943-PA
           protein.
          Length = 300

 Score = 85.4 bits (202), Expect = 9e-17
 Identities = 36/78 (46%), Positives = 54/78 (69%)
 Frame = +1

Query: 25  WILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFSELEKMEYLPVKVK 204
           W LL+IP T+F LG WQV R  WK  LI  +  + +  P+ +P D ++L +MEY  VK++
Sbjct: 65  WFLLLIPATTFGLGCWQVKRKIWKEQLIKDLNKQLSTAPVALPDDLTDLAQMEYRLVKIR 124

Query: 205 GEFLHEKEILIGPRALMK 258
           G FLH+KE+ +GPR+L++
Sbjct: 125 GRFLHDKEMRLGPRSLIR 142



 Score = 82.6 bits (195), Expect = 6e-16
 Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
 Frame = +2

Query: 509 KGS-WFYRDLDQMSAHIGCLPIWLDAKGIPDPPTGWPIPNQTRVTLRNEHFSYIVTWYSL 685
           KG+ + YRDL +M A  G  P++LDA   P      PI  QTRVTLRN+H SY+VTW+SL
Sbjct: 223 KGNVYLYRDLARMCAATGAAPVFLDAVYDPQTAAHAPIGGQTRVTLRNDHLSYLVTWFSL 282

Query: 686 FAFTSIMWHRFFIRKLP 736
            A TS +W+R  ++++P
Sbjct: 283 SAATSFLWYRQIVKRIP 299



 Score = 62.1 bits (144), Expect = 9e-10
 Identities = 29/71 (40%), Positives = 40/71 (56%)
 Frame = +3

Query: 282 GSLVSDPKKNQGWLVITPFKLADTGEVILINRGWIHQNLRPKEKREPSLIKGPVELTGVV 461
           G L S      G+L++TPF+LAD  +++L+NRGW+ +     E R     +  VELT VV
Sbjct: 150 GGLFSQRDSGNGYLIVTPFQLADRDDIVLVNRGWVSRKQVEPETRPLGQQQAEVELTAVV 209

Query: 462 RLTEKRAPFMP 494
           R  E R  F P
Sbjct: 210 RKGEARPQFTP 220


>AY118815-1|AAM50675.1|  185|Drosophila melanogaster GH23574p
           protein.
          Length = 185

 Score = 82.6 bits (195), Expect = 6e-16
 Identities = 38/77 (49%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
 Frame = +2

Query: 509 KGS-WFYRDLDQMSAHIGCLPIWLDAKGIPDPPTGWPIPNQTRVTLRNEHFSYIVTWYSL 685
           KG+ + YRDL +M A  G  P++LDA   P      PI  QTRVTLRN+H SY+VTW+SL
Sbjct: 108 KGNVYLYRDLARMCAATGAAPVFLDAVYDPQTAAHAPIGGQTRVTLRNDHLSYLVTWFSL 167

Query: 686 FAFTSIMWHRFFIRKLP 736
            A TS +W+R  ++++P
Sbjct: 168 SAATSFLWYRQIVKRIP 184



 Score = 62.1 bits (144), Expect = 9e-10
 Identities = 29/71 (40%), Positives = 40/71 (56%)
 Frame = +3

Query: 282 GSLVSDPKKNQGWLVITPFKLADTGEVILINRGWIHQNLRPKEKREPSLIKGPVELTGVV 461
           G L S      G+L++TPF+LAD  +++L+NRGW+ +     E R     +  VELT VV
Sbjct: 35  GGLFSQRDSGNGYLIVTPFQLADRDDIVLVNRGWVSRKQVEPETRPLGQQQAEVELTAVV 94

Query: 462 RLTEKRAPFMP 494
           R  E R  F P
Sbjct: 95  RKGEARPQFTP 105



 Score = 39.9 bits (89), Expect = 0.004
 Identities = 15/27 (55%), Positives = 23/27 (85%)
 Frame = +1

Query: 178 MEYLPVKVKGEFLHEKEILIGPRALMK 258
           MEY  VK++G FLH+KE+ +GPR+L++
Sbjct: 1   MEYRLVKIRGRFLHDKEMRLGPRSLIR 27


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,626,926
Number of Sequences: 53049
Number of extensions: 818439
Number of successful extensions: 1810
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1810
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)