Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1443
(846 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006651-9|AAF39867.1| 323|Caenorhabditis elegans Surfeit homol... 79 4e-15
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 29 3.1
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 5.5
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 5.5
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 5.5
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 5.5
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 5.5
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 5.5
Z69902-3|CAA93768.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical pr... 28 9.6
AC006831-1|AAF39995.1| 558|Caenorhabditis elegans Hypothetical ... 28 9.6
>AC006651-9|AAF39867.1| 323|Caenorhabditis elegans Surfeit homolog
protein 1 protein.
Length = 323
Score = 79.0 bits (186), Expect = 4e-15
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Frame = +1
Query: 28 ILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFS--ELEKMEYLPVKV 201
++L IPV +F+LG WQ +R +WKL LI+ ++ + N ++P+D S LE +EY V V
Sbjct: 87 LMLTIPVFAFSLGIWQTFRLKWKLDLIEHLKGRLNQTAQELPEDLSCESLEPLEYCRVTV 146
Query: 202 KGEFLHEKEILIGPR 246
GEFLHEKE +I PR
Sbjct: 147 TGEFLHEKEFIISPR 161
Score = 74.9 bits (176), Expect = 6e-14
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Frame = +2
Query: 509 KGSWFYRDLDQMSAHIGCLPIWLDAKGIPDPPTGWPIPNQTRVTLRNEHFSYIVTWYSLF 688
+G W+YRDL+QM+ H G P+ LDA P G PI QT + +RNEH +Y+ TW++L
Sbjct: 252 QGVWYYRDLNQMAKHYGTEPVLLDAAYETTVPGG-PIGGQTNINVRNEHLNYLTTWFTLT 310
Query: 689 AFTSIMW-HRF 718
T +MW H+F
Sbjct: 311 LVTMLMWIHKF 321
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +3
Query: 282 GSLVSDPK-KNQGWLVITPFKLADTGEVILINRGWIHQNLRPKEKREPSLIKGPVELTGV 458
GS++S+ + + G +ITPF+L ++G++ILINRGW+ E R+ + +G + L +
Sbjct: 175 GSMLSENEMSSHGGHLITPFRLKNSGKIILINRGWLPSFYFDPETRQKTNPRGTLTLPAI 234
Query: 459 VRLTEKRAPFMPKNNPEK 512
VR TEKR F+ +N PE+
Sbjct: 235 VRKTEKRPQFVGQNVPEQ 252
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
protein C27H6.1 protein.
Length = 1657
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -3
Query: 670 DNVRKVFIPQCYSGLIWDRPTSRWVWDTFCIQP 572
D + P Y G IW+ T W +D + P
Sbjct: 392 DGTENAYDPNAYPGYIWNYETQEWEYDPSYVAP 424
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 233 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 57
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 3069 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 3127
Query: 56 KEVTGIISKIHLYI 15
K T I S + I
Sbjct: 3128 KVETKITSSSRIAI 3141
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 233 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 57
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 2429 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 2487
Query: 56 KEVTGIISKIHLYI 15
K T I S + I
Sbjct: 2488 KVETKITSSSRIAI 2501
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 233 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 57
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 3069 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 3127
Query: 56 KEVTGIISKIHLYI 15
K T I S + I
Sbjct: 3128 KVETKITSSSRIAI 3141
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 233 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 57
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 3069 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 3127
Query: 56 KEVTGIISKIHLYI 15
K T I S + I
Sbjct: 3128 KVETKITSSSRIAI 3141
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 233 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 57
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 2429 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 2487
Query: 56 KEVTGIISKIHLYI 15
K T I S + I
Sbjct: 2488 KVETKITSSSRIAI 2501
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 233 NISFSCKNSPF-TFTGKYSIFSNSEKSFGMSIGTALDLACIMSMSPSFHCHLYTCHEPRV 57
N + K F T G+ +F+ ++ +SIG L L+C + SP H Y+ E
Sbjct: 3069 NTEGTSKTEAFLTVQGEAPVFTKELQNKELSIGEKLVLSCSVKGSPQPHVDFYSFSE-TT 3127
Query: 56 KEVTGIISKIHLYI 15
K T I S + I
Sbjct: 3128 KVETKITSSSRIAI 3141
>Z69902-3|CAA93768.1| 305|Caenorhabditis elegans Hypothetical
protein C47D12.4 protein.
Length = 305
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 738 NGNFLMKKRCHIILV-NANKEYHVTMYEKCSFRNV 637
+ F K C + N KE H+T+YE C F +V
Sbjct: 259 DNRFYRFKNCEFLTTCNNGKESHLTIYEHCFFLSV 293
>Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical
protein R07E3.5a protein.
Length = 512
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +1
Query: 28 ILLMIPVTSFTLGSWQ------VYRWQWKLGLIDMMQAKSNAVPIDMPKDF 162
+L+ + VT TLG + VY ++W L + + + +V DMP+DF
Sbjct: 12 LLIFLAVTGKTLGLREYYVNTLVYIFEWGATLNEQYEEEEGSVEEDMPEDF 62
>AC006831-1|AAF39995.1| 558|Caenorhabditis elegans Hypothetical
protein ZK121.2 protein.
Length = 558
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = -2
Query: 227 SFSCKNSPFTFTGKYSIFSNSEKSFGMSIG-------TALDLACIMSMSPSFHCHLYTCH 69
SF C N+ + TGK+ + +E GM+ G ++ + C S H H + H
Sbjct: 344 SFDCSNNSYLCTGKHPMMRKAESFGGMANGISHGCYEQSVPVVCGTPPSVMVHHHHHHAH 403
Query: 68 --EPRVKEVTG 42
+P TG
Sbjct: 404 IQQPPTSNYTG 414
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,770,784
Number of Sequences: 27780
Number of extensions: 434918
Number of successful extensions: 1183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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