Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1443
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    27   0.29 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.2  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   8.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 70  WQVYRWQWKLGL 105
           WQ Y WQW LG+
Sbjct: 95  WQQYPWQWGLGI 106


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 673 MVFFVCIY*YYVASFLH*KVTIIVNKAKSL*VRALLILRYL 795
           ++ F+C+  +Y+ +    KVT+ ++   SL V  LL+ + L
Sbjct: 246 LISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKIL 286


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 151 PKDFSELEKMEYLPVKVKGEFLHEK 225
           P DFS   K  ++  KV+G  +HE+
Sbjct: 208 PTDFSMGVKNNHVSSKVEGNGVHEE 232


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 101 PSFHCHLYTCHEPRVKEVTGII 36
           P+F CH Y      V E  GI+
Sbjct: 50  PTFMCHKYGLRFEEVSEKYGIL 71


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 254 MSALGPINISFSCKNSPFTFTGKYSIFSNSEKSFGMSIGTALD 126
           +SAL  +N  ++ KN+  ++ G   I  N  ++   +  T +D
Sbjct: 388 ISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIID 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,545
Number of Sequences: 438
Number of extensions: 5362
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)