Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1441
         (680 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1; ...    45   0.001
UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    42   0.011
UniRef50_UPI000150A9BD Cluster: hypothetical protein TTHERM_0014...    33   8.5  
UniRef50_Q9SVV9 Cluster: Putative uncharacterized protein F15J5....    33   8.5  

>UniRef50_Q86QT4 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 47

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -2

Query: 169 LKFENGWTDLANFGLKLFVEVQKRFK 92
           LK ENGWTDLANFGL+L VEVQ+  K
Sbjct: 20  LKLENGWTDLANFGLELPVEVQRGLK 45


>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 42.3 bits (95), Expect = 0.011
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = +3

Query: 21  GDTSKEKQNCNFYLIPSIFI 80
           GDTSKEKQNC FYLIP IFI
Sbjct: 56  GDTSKEKQNCYFYLIPRIFI 75


>UniRef50_UPI000150A9BD Cluster: hypothetical protein
           TTHERM_00145310; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00145310 - Tetrahymena
           thermophila SB210
          Length = 727

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 680 YTLVFS-SYYCNIHIYCITYVYSLVSILCVHCILFI 576
           Y   F+ SYYC I ++ I  V  ++++LC+  ++F+
Sbjct: 555 YVTTFNPSYYCRIRLWSIQNVNIIIAVLCIFFLIFL 590


>UniRef50_Q9SVV9 Cluster: Putative uncharacterized protein F15J5.90;
           n=2; Arabidopsis thaliana|Rep: Putative uncharacterized
           protein F15J5.90 - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 715

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 130 QN*PNRSSRSRILARLTNSNSFIYSFIY--IDFRN 228
           +N PN+ +R+ +LA +   NS  Y F+Y  IDF+N
Sbjct: 519 KNIPNKYTRNMLLAAIDEKNSGTYDFLYLPIDFKN 553


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,225,947
Number of Sequences: 1657284
Number of extensions: 9348575
Number of successful extensions: 19180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19084
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)