Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1441
         (680 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    35   0.31 
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    32   1.6  
AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    30   6.6  

>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 34.7 bits (76), Expect = 0.31
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 680 YTLVFSSYYCNIHIYCITYVYSLVSILCVHCILFIF 573
           YT +    Y +IH Y   YVYS   I C+H  +FI+
Sbjct: 40  YTRICIHMYIHIHAYAYIYVYSYTRI-CIHICIFIY 74



 Score = 33.1 bits (72), Expect = 0.94
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 680 YTLVFSSYYCNIHIYCITYVYSLVSILCVHCILFI 576
           YT + +  Y +IH Y   YVYS   I C+H  +FI
Sbjct: 74  YTHMHTYMYIHIHAYAYIYVYSYTRI-CIHICVFI 107


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 680 YTLVFSSYYCNIHIYCITYVYSLVSILCVHCILFI 576
           YT + +  Y ++H Y   YVYS   I C+H  +FI
Sbjct: 94  YTHMHTYMYIHMHAYAYIYVYSYTRI-CIHICIFI 127


>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -1

Query: 677 TLVFSSYYCNIHIYCITYVYSLVSILCVHCILFI 576
           T +++     +H+Y   YV + + I+C+H  +++
Sbjct: 55  TCIYTHICMRVHVYAYMYVRTYIHIMCMHVCVYV 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,623,945
Number of Sequences: 237096
Number of extensions: 1300904
Number of successful extensions: 1556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)