Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1441
         (680 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060674-1|AAL28222.1|  876|Drosophila melanogaster GH10703p pro...    29   5.9  
AE014297-2485|AAF55525.1|  876|Drosophila melanogaster CG7146-PA...    29   5.9  

>AY060674-1|AAL28222.1|  876|Drosophila melanogaster GH10703p
           protein.
          Length = 876

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 227 IRSRVAVKMKLIYF--STQGLNLLELRIRILDSKQIKIYLSHMICMRF 364
           IR   A++ +L++F      LN LEL I + D  +   ++ H +C+ F
Sbjct: 126 IRVCCAIRRRLVFFFWKEDKLNSLELIIELSDVPRTLCWVGHAVCVGF 173


>AE014297-2485|AAF55525.1|  876|Drosophila melanogaster CG7146-PA
           protein.
          Length = 876

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 227 IRSRVAVKMKLIYF--STQGLNLLELRIRILDSKQIKIYLSHMICMRF 364
           IR   A++ +L++F      LN LEL I + D  +   ++ H +C+ F
Sbjct: 126 IRVCCAIRRRLVFFFWKEDKLNSLELIIELSDVPRTLCWVGHAVCVGF 173


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,778,122
Number of Sequences: 53049
Number of extensions: 415421
Number of successful extensions: 763
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)