Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1441
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule abnor...    29   4.1  
AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical...    29   4.1  
M77697-8|ABB88245.1|  308|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical ...    28   7.1  

>Z37983-5|CAA86059.2|  405|Caenorhabditis elegans Hypothetical
           protein B0393.6 protein.
          Length = 405

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 596 HTEY*LDCKHT*CNICVCYNNNLKKREC 679
           H  + L C HT C +C+  ++  KKR C
Sbjct: 27  HAPHVLPCSHTFCLMCLSKHDQRKKRHC 54


>U52003-4|ABB51171.1|  771|Caenorhabditis elegans P granule
           abnormality protein 1,isoform b protein.
          Length = 771

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 27  TSKEKQNCNFYLIPSIFIVFYFLNLFW 107
           T +E+ +CNF L+P  F VF    LFW
Sbjct: 13  TRRERGSCNFDLVPIFFSVFL---LFW 36


>AL021487-12|CAA16358.2|  324|Caenorhabditis elegans Hypothetical
           protein Y45F10B.6 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 57  YLIPSIFIVFYFLNLFWTS 113
           YL+P++FI+F    +FW S
Sbjct: 36  YLVPTVFIIFKVFKVFWGS 54


>M77697-8|ABB88245.1|  308|Caenorhabditis elegans Hypothetical
           protein B0303.16 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 12  SDGGDTSKEKQNCNFYLIPSIFIVFYFLNLFWTSTNNL 125
           ++ GD SK  ++    +IP I I+ +FL  + T  +++
Sbjct: 89  AESGDESKSDKSLMTQIIPKISIILFFLAFYLTHASSM 126


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 108 TSTN-NLRPKLAKSVQPFSNFSETNEQQFIYIFIHLYRFPKF 230
           +STN +L+ ++ K +  F   +  N  QF+  FI LY+ P F
Sbjct: 339 SSTNPSLQERICKLIALFVKKAPENADQFVLYFITLYQKPFF 380


>AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical
           protein T12B5.8 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 238 RRSKNETNIFFNSGTKLVRT*NKNFRFKTD*NLLIAHDLYEILIHFISHKC 390
           + +   TN+F N  TKL+   N   R   D  ++  H     +++F  ++C
Sbjct: 84  KTANGSTNVFHNEQTKLIDGENFMERAAKDFKIVSKHARKNYIVNFTKNRC 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,425,572
Number of Sequences: 27780
Number of extensions: 243225
Number of successful extensions: 558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)