Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1441
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   0.67 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   0.67 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   6.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.2  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145 RSSRSRIL-ARLTNSNSFIYSFIYIDFRNSEPRRSKNETNIFFNSGTKLVRT*NKNFR 315
           R+SR R   +R    NS+     Y  +R +   RS++ T    +  TK++ + N N++
Sbjct: 255 RTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYK 312


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 145 RSSRSRIL-ARLTNSNSFIYSFIYIDFRNSEPRRSKNETNIFFNSGTKLVRT*NKNFR 315
           R+SR R   +R    NS+     Y  +R +   RS++ T    +  TK++ + N N++
Sbjct: 266 RTSRKRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYK 323


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +3

Query: 57  YLIPSIFIVFYFLNLFWTSTNNLRPKLAKSV 149
           Y+IP++ ++   L + W  + +    +A SV
Sbjct: 259 YVIPAVTMMLLTLTVLWLDSRSTERMIAASV 289


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/43 (25%), Positives = 16/43 (37%)
 Frame = +3

Query: 87  YFLNLFWTSTNNLRPKLAKSVQPFSNFSETNEQQFIYIFIHLY 215
           ++L   W    NLR  + K +       +T     I    HLY
Sbjct: 88  FYLGKEWKKNLNLRDSVTKYLIHLKEIEDTEPILLIAYIYHLY 130


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 57  YLIPSIFIVFYFLNLFWTSTNN 122
           Y+IP IFI+ ++  L  +  N+
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNH 250


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 99  LFWTSTNNLRPKLAKSVQPFSNFSETNEQQFIY 197
           LF+    +L  K+ K+V P S   +   ++F Y
Sbjct: 282 LFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFY 314


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 175 LTNSNSFIYSFIYIDF 222
           LTNS   IY + YID+
Sbjct: 25  LTNSLKVIYEWKYIDY 40


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 57  YLIPSIFIVFYFLNLFWTSTNN 122
           Y+IP IFI+ ++  L  +  N+
Sbjct: 229 YVIPLIFIILFYSRLLSSIRNH 250


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/37 (29%), Positives = 14/37 (37%)
 Frame = +3

Query: 57  YLIPSIFIVFYFLNLFWTSTNNLRPKLAKSVQPFSNF 167
           Y IPSI IV      FW   +   P++         F
Sbjct: 238 YYIPSILIVVISWVSFWLHMDASPPRIVLGTNTILTF 274


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 555 WLNHSSKYKQ 584
           WLNHS  Y Q
Sbjct: 661 WLNHSPNYDQ 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,139
Number of Sequences: 438
Number of extensions: 3319
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)