Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1440
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    54   1e-08
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   0.90 
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    28   1.2  
SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.6  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   2.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.1  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   2.7  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    26   3.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   6.3  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    25   8.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   8.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.4  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    25   8.4  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
 Frame = +3

Query: 252 SPWPLYSMNWSVRPDKRFR-LALGSFVEEYNNKVQIISL---DEDTSEFT-AKSTFDHPY 416
           +PW  ++++W  +       +A+GS  EE NN +Q++ L   D+  S    A++  D  Y
Sbjct: 49  APWIPFALDWLKQGKYSSEWIAMGSLNEEPNNMIQLLKLITGDDGNSHLEKAQAATDLEY 108

Query: 417 PTTKIMWIPDSKGVYPD--LLATSGDYLRIWRAE 512
           P TK++W P S G   D  LLA++   LR+W+ +
Sbjct: 109 PVTKLLWNPSSVGSNTDSQLLASTDQQLRLWKTD 142


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +3

Query: 375 TSEFTAKSTFDHPYPTTKIMWIPDSKGVYPDL--LATSGDYLRIWRAESRTHYSNVS*II 548
           TSEF   S+  HP     +  I D KG Y ++  L + GD   +  A  R          
Sbjct: 403 TSEFCISSSLRHPNVIHTLDLIQDGKGDYCEVMELCSGGDLYTLIMAAGRLEPMEADCFF 462

Query: 549 IRILTSVLLLHPL 587
            +++  V  LH +
Sbjct: 463 KQLMRGVDYLHDM 475


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -3

Query: 467 VWIHPLAIRYPHNLGGRVRVIKGTFCSELTCVFIKGNYLYF 345
           +W   +  RY H+L    + I G     + C  +   Y YF
Sbjct: 196 IWWSFIMFRYRHDLLQVQKYISGVVALSIVCTMVSTGYFYF 236


>SPBC16G5.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 126

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 438 IPDSKGVYPDLLATSGDYLRIWRAESRTHYSNV 536
           +P +K    D L TS +YLR   AE+   Y NV
Sbjct: 69  VPSAKQKLADSLFTSHEYLRQTSAEANKLYENV 101


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 540 RTHSNNVYGSPHAICVDNH 484
           +TH NN  G P   C+D+H
Sbjct: 427 KTHFNNPIGQPQFTCLDDH 445


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 152  ISQNGHQAALLCLI*IYLFKY*TVHELL 69
            I QNG + AL CL  I+ F+  TV +L+
Sbjct: 1086 IDQNGFEDALRCLYGIHAFRLYTVEKLV 1113


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 591  QSKDVRGAQKSEFL-LLFRTHSNNVYGSPHAICVDNH 484
            Q+K VR AQ      LL    S+ V+ +  A+C+ NH
Sbjct: 942  QTKAVRSAQHCYIQSLLLNERSSGVWANYGALCIQNH 978


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 382 SLVSSSREIICTLLLYSSTKLPRANLNLLSGL 287
           SLV   +EI C + ++SS       L+LLSG+
Sbjct: 331 SLVEGVKEINCPVYIFSSLHESGKQLDLLSGI 362


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 480 SGDYLRIWRAESRTHYSNVS*IIIRILTSVLLLHPLIG 593
           SG Y   W  ++++ +S++   I  ILT  LL  P++G
Sbjct: 662 SGRYAAHWLGDNKSQWSDMVSSISSILTFNLLGIPMVG 699


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 406 SKVLFAVNSLVSSSREIICTLLLYSSTKLPRANLNLLSGLTDQ 278
           SKVL   N + S       T LLYS++ LPR++  L++  T++
Sbjct: 122 SKVLIHQNLIPSLFSVSNSTKLLYSASLLPRSSERLVTLETNE 164


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 259  HGLGICIFLYVSCLNWYSNC-CVASTSLIM 173
            HG+ + +F+ V  ++WY    C+A T L M
Sbjct: 1682 HGITVFMFIIVFEVSWYLEAWCLAKTVLSM 1711


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 292 GLTDQFIEYNGHGLGICIFLYVSCLNWYSNC 200
           G  + +++Y  +  GI  F +  CLN +S C
Sbjct: 268 GYLNLWMKYAEYFTGISEFTFNDCLNMFSKC 298


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 324 FVEEYNNKVQIISLDEDTSEFTAKSTFDHPY 416
           F+++Y N   +I  D    +  A++ F  PY
Sbjct: 154 FLQDYQNTFDVIITDSSDPDGPAEALFQKPY 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,171
Number of Sequences: 5004
Number of extensions: 56852
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)