Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1440
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0044 - 19198001-19199236 118 4e-27
02_05_0322 - 27926619-27927686 56 2e-08
11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080... 32 0.40
10_07_0062 - 12499872-12501350 30 1.6
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362... 29 2.1
09_02_0244 + 6196651-6196799,6197049-6197106,6197212-6197304 28 4.9
07_01_0230 - 1679165-1681108 28 6.5
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 28 6.5
05_03_0612 - 16177362-16178102,16178404-16178539,16180612-161806... 28 6.5
>02_04_0044 - 19198001-19199236
Length = 411
Score = 118 bits (284), Expect = 4e-27
Identities = 49/86 (56%), Positives = 63/86 (73%)
Frame = +3
Query: 258 WPLYSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKIMW 437
W +Y MNWSVR DK++RLA+ S +E++NN VQ++ LDE + + TFDHPYP TK M+
Sbjct: 43 WHIYGMNWSVRRDKKYRLAIASLLEQHNNHVQVVQLDESSGDIAPVLTFDHPYPPTKTMF 102
Query: 438 IPDSKGVYPDLLATSGDYLRIWRAES 515
+PD V PDLLATS D+LRIWR S
Sbjct: 103 VPDPHSVRPDLLATSADHLRIWRIPS 128
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +2
Query: 515 PYTLFECVLNNNKNSDFCAPLTSFDWNE 598
P C LN N+NSD+C PLTSFDWN+
Sbjct: 153 PDVELRCELNGNRNSDYCGPLTSFDWND 180
>02_05_0322 - 27926619-27927686
Length = 355
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Frame = +3
Query: 309 LALGSFVEEYNNKVQIISLDE---DTSEFTAKS--TFDHPYPTTKIMWIPDSKGVYPDLL 473
LA GSF+E+ +N+V ++S D + F A +FDHPYP TK+ + P + P LL
Sbjct: 42 LAAGSFLEDLHNRVSLLSFDPVHPTAASFRALPALSFDHPYPPTKLQFHPRAASA-PHLL 100
Query: 474 ATSGDYLRIWRA 509
A+S D LR+W A
Sbjct: 101 ASSSDALRLWLA 112
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/23 (73%), Positives = 19/23 (82%), Gaps = 2/23 (8%)
Frame = +2
Query: 536 VLNNNKNS--DFCAPLTSFDWNE 598
VL+N K S +FCAPLTSFDWNE
Sbjct: 131 VLDNRKTSASEFCAPLTSFDWNE 153
>11_04_0158 +
14207463-14207629,14207724-14207774,14207874-14208002,
14209342-14209447,14209491-14209601,14210042-14210098,
14210903-14211727
Length = 481
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 222 HET*RNIQIPSPWPLYSMNWSVRPDKRFRLALGSFVEEYNNKVQII 359
HE RN+ + S W YS+ W++RP R R G V + N + ++
Sbjct: 32 HEALRNVCLNSDWT-YSVFWTIRPRPRCRGGNGCKVGDDNGSLMLM 76
>10_07_0062 - 12499872-12501350
Length = 492
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 440 YPHNLGGRVRVIKGTFCSELTCVF 369
YPHN G RV+ G F E CV+
Sbjct: 271 YPHNPSGEYRVLYGEFHGEEECVY 294
>10_08_0403 -
17635530-17635578,17635737-17635820,17636110-17636219,
17637507-17637638,17638497-17638576,17638877-17639008,
17639534-17639648,17640244-17640286,17640359-17640493,
17641347-17641414,17641473-17641478
Length = 317
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 427 RLCGYLIARGCIQTCWQLAVIIY 495
RL YL +RGC +CWQ + Y
Sbjct: 264 RLVAYLSSRGCEYSCWQFVLTGY 286
>09_02_0244 + 6196651-6196799,6197049-6197106,6197212-6197304
Length = 99
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 279 WSVRPDKRFRLALGSFVEEYNNKVQIIS 362
WS+R FR+A+G F +++ Q IS
Sbjct: 36 WSIRERVNFRIAIGRFGQDWPRVAQFIS 63
>07_01_0230 - 1679165-1681108
Length = 647
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 366 DEDTSEFTAKSTFDHPYPTTKIMWIPDSKGVYPDLLATSGDYLRIW 503
+E+ + S+F P T + D G++ DL G ++IW
Sbjct: 131 NENDISISINSSFSRPLETHPAGFYDDKNGIFNDLPLVGGKAVQIW 176
>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 354 IISLDEDTSEFTAKSTFDHPYPTTKIMWIPD-SKGVYPDLLATSGDYLRIWRAESRTHYS 530
+IS D TSE + PT ++ +P G D L TS + L +W Y+
Sbjct: 1184 VISNDRGTSELEHHRGYHRVRPTVAVLPLPSLLVGYQDDWLKTSANCLSLWEKAPLEPYA 1243
Query: 531 N 533
+
Sbjct: 1244 S 1244
>05_03_0612 -
16177362-16178102,16178404-16178539,16180612-16180658,
16181002-16181082,16181765-16181846,16181924-16182036,
16182349-16182456,16182531-16182642,16182738-16182847,
16183105-16183242,16183370-16183834
Length = 710
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 279 WSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAK 395
+SV+ D+R L L + NN+ I + +DT+ FT K
Sbjct: 463 YSVKADERSGLGLSLDLSSGNNESSSILIADDTAAFTRK 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,922
Number of Sequences: 37544
Number of extensions: 344898
Number of successful extensions: 673
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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