Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1440
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical pr... 130 7e-31
Z79756-5|CAB02115.1| 388|Caenorhabditis elegans Hypothetical pr... 71 5e-13
U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical pr... 31 0.82
U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 27 7.7
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 27 7.7
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 27 7.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 7.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 7.7
>Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical
protein F53C11.7 protein.
Length = 478
Score = 130 bits (314), Expect = 7e-31
Identities = 54/87 (62%), Positives = 68/87 (78%), Gaps = 2/87 (2%)
Frame = +3
Query: 252 SPWPLYSMNWSVR--PDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTT 425
+P+ L+S WS P ++FRLA+ SF+EEY+NK+ I+ LDE+ E +STFDHPYP T
Sbjct: 147 APFTLFSHGWSAATDPSRKFRLAVSSFIEEYSNKIHIVQLDEEAGELVHRSTFDHPYPAT 206
Query: 426 KIMWIPDSKGVYPDLLATSGDYLRIWR 506
KIMWIPD KG +PDLLATSGDYLR+WR
Sbjct: 207 KIMWIPDQKGTFPDLLATSGDYLRLWR 233
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +2
Query: 530 ECVLNNNKNSDFCAPLTSFDWNE 598
E +LN N+ +++CAPLTSFDWNE
Sbjct: 243 ESLLNTNRTAEYCAPLTSFDWNE 265
>Z79756-5|CAB02115.1| 388|Caenorhabditis elegans Hypothetical
protein F53C11.8 protein.
Length = 388
Score = 71.3 bits (167), Expect = 5e-13
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Frame = +3
Query: 264 LYSMNWSVRPDKRFRLALGSFVE-EYN----NKVQIISLDEDTSEFTAKSTFDHPYPTTK 428
LY+ WS + D +FRLA+G+ + N NKV I+ L ++T E ++F +P
Sbjct: 59 LYASAWSNKNDIKFRLAVGTVSDVSVNPCAANKVSIVQLKDETGELVETASFPMEFPANA 118
Query: 429 IMWIPDSKGVYPDLLATSGDYLRIWR-AESRTH 524
+ +IPD VYPDL+AT+ D LR+WR + + H
Sbjct: 119 VGFIPDPDNVYPDLIATTSDCLRLWRVVDGKVH 151
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 530 ECVLNNNKNSDFCAPLTSFDWNE 598
+ V+ NN NS + + LTSFDWNE
Sbjct: 153 DAVMINNTNSQYGSALTSFDWNE 175
>U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical
protein F31E8.1 protein.
Length = 249
Score = 30.7 bits (66), Expect = 0.82
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 411 PYPTTKIMWIPDSKGVYPDLLATSGD 488
P P K+ W P ++P ++ATSGD
Sbjct: 114 PLPAGKLRWGPQVPSLFPHVIATSGD 139
>U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical
protein C02G6.1 protein.
Length = 980
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = +1
Query: 379 VSSLQKVPLITRTRPPRLCGYLIARGCIQTCWQLAVIIYAYGVRRAVHII 528
+ L K P+ R GY++ GC C +A+ I+ G + +++
Sbjct: 767 IDQLIKEPVFDTLRTNEALGYIVWTGCRFNCGAVALNIFVQGPKSVDYVL 816
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 411 PYPTTKIMWIPDSKGVY--PDLLATSGDYLRI 500
PY + K +WIPD + Y ++ AT GD + I
Sbjct: 26 PYDSKKNVWIPDPEEGYLAGEITATKGDQVTI 57
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 411 PYPTTKIMWIPDSKGVY--PDLLATSGDYLRI 500
PY + K +WIPD + Y ++ AT GD + I
Sbjct: 26 PYDSKKNVWIPDPEEGYLAGEITATKGDQVTI 57
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 411 PYPTTKIMWIPDSKGVY--PDLLATSGDYLRI 500
PY + K +WIPD + Y ++ AT GD + I
Sbjct: 26 PYDSKKNVWIPDPEEGYLAGEITATKGDQVTI 57
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 369 EDTSEFTAKSTFDHPYPTTKIMWIPDSK 452
++ E T T +HP +K++W+ D K
Sbjct: 13977 KEGQEVTISVTLNHPIDISKVVWLKDGK 14004
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 369 EDTSEFTAKSTFDHPYPTTKIMWIPDSK 452
++ E T T +HP +K++W+ D K
Sbjct: 13977 KEGQEVTISVTLNHPIDISKVVWLKDGK 14004
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,522,462
Number of Sequences: 27780
Number of extensions: 318676
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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