Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1440
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont...   109   2e-24
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea...   108   2e-24
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG...    85   4e-17
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG...    85   4e-17
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG...    85   4e-17
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family...    31   0.44 
At5g53900.2 68418.m06706 expressed protein similar to unknown pr...    29   3.1  
At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein / c...    27   7.2  
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea...    27   9.5  
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE...    27   9.5  

>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
           contains 3 WD-40 repeats (PF00400); identical to
           GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
           (11), 1422-1434 (1997))
          Length = 346

 Score =  109 bits (261), Expect = 2e-24
 Identities = 46/87 (52%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
 Frame = +3

Query: 252 SPWPLYSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTA--KSTFDHPYPTT 425
           +PW +Y+MNWSVR DK++RLA+ S +E+Y N+V+I+ LDE   E  +    +F+HPYP T
Sbjct: 26  APWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPNLSFEHPYPPT 85

Query: 426 KIMWIPDSKGVYPDLLATSGDYLRIWR 506
           K ++IPD +   PDLLATS D+LR+WR
Sbjct: 86  KTIFIPDKECQRPDLLATSSDFLRLWR 112



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +2

Query: 539 LNNNKNSDFCAPLTSFDWNE 598
           LN+NKNS+FC PLTSFDWNE
Sbjct: 126 LNSNKNSEFCGPLTSFDWNE 145


>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
           (Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
           profile: PF00400 WD domain, G-beta repeat (3 copies)
          Length = 346

 Score =  108 bits (260), Expect = 2e-24
 Identities = 45/87 (51%), Positives = 63/87 (72%), Gaps = 2/87 (2%)
 Frame = +3

Query: 252 SPWPLYSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKST--FDHPYPTT 425
           +PW +Y+MNWS+R DK++RLA+ S +E+Y N+V+I+ LDE   E  +     F+HPYP T
Sbjct: 26  APWQIYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNLCFEHPYPPT 85

Query: 426 KIMWIPDSKGVYPDLLATSGDYLRIWR 506
           K  +IPD +   PDLLATS D+LR+WR
Sbjct: 86  KTSFIPDKECQRPDLLATSSDFLRLWR 112



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +2

Query: 539 LNNNKNSDFCAPLTSFDWNE 598
           L+++KNS+F  P+TSFDWNE
Sbjct: 126 LSSDKNSEFSGPITSFDWNE 145


>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
           identical to transparent testa glabra 1 (Ttg1) protein
           (GI:10177852) {Arabidopsis thaliana}; contains Pfam
           PF00400: WD domain, G-beta repeat (4 copies,1 weak);
          Length = 341

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 5/89 (5%)
 Frame = +3

Query: 252 SPWPLYSMNWS-VRPDKRFRLALGSFVEEYNNKVQIISLDED--TSEFTAKSTFDHPYPT 422
           SP+PLY+M +S +R     R+A+GSF+E+YNN++ I+S D D  T +     +F+HPYP 
Sbjct: 20  SPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPP 79

Query: 423 TKIMWIPDS--KGVYPDLLATSGDYLRIW 503
           TK+M+ P S  +    DLLA+SGD+LR+W
Sbjct: 80  TKLMFSPPSLRRPSSGDLLASSGDFLRLW 108



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +2

Query: 536 VLNNNKNSDFCAPLTSFDWNE 598
           VLNN+K S+FCAPLTSFDWN+
Sbjct: 122 VLNNSKTSEFCAPLTSFDWND 142


>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
           identical to transparent testa glabra 1 (Ttg1) protein
           (GI:10177852) {Arabidopsis thaliana}; contains Pfam
           PF00400: WD domain, G-beta repeat (4 copies,1 weak);
          Length = 341

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 5/89 (5%)
 Frame = +3

Query: 252 SPWPLYSMNWS-VRPDKRFRLALGSFVEEYNNKVQIISLDED--TSEFTAKSTFDHPYPT 422
           SP+PLY+M +S +R     R+A+GSF+E+YNN++ I+S D D  T +     +F+HPYP 
Sbjct: 20  SPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPP 79

Query: 423 TKIMWIPDS--KGVYPDLLATSGDYLRIW 503
           TK+M+ P S  +    DLLA+SGD+LR+W
Sbjct: 80  TKLMFSPPSLRRPSSGDLLASSGDFLRLW 108



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +2

Query: 536 VLNNNKNSDFCAPLTSFDWNE 598
           VLNN+K S+FCAPLTSFDWN+
Sbjct: 122 VLNNSKTSEFCAPLTSFDWND 142


>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
           identical to transparent testa glabra 1 (Ttg1) protein
           (GI:10177852) {Arabidopsis thaliana}; contains Pfam
           PF00400: WD domain, G-beta repeat (4 copies,1 weak);
          Length = 341

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 5/89 (5%)
 Frame = +3

Query: 252 SPWPLYSMNWS-VRPDKRFRLALGSFVEEYNNKVQIISLDED--TSEFTAKSTFDHPYPT 422
           SP+PLY+M +S +R     R+A+GSF+E+YNN++ I+S D D  T +     +F+HPYP 
Sbjct: 20  SPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPP 79

Query: 423 TKIMWIPDS--KGVYPDLLATSGDYLRIW 503
           TK+M+ P S  +    DLLA+SGD+LR+W
Sbjct: 80  TKLMFSPPSLRRPSSGDLLASSGDFLRLW 108



 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +2

Query: 536 VLNNNKNSDFCAPLTSFDWNE 598
           VLNN+K S+FCAPLTSFDWN+
Sbjct: 122 VLNNSKTSEFCAPLTSFDWND 142


>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
           protein
          Length = 883

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +3

Query: 300 RFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKIMWIPDSKGVYPDLLAT 479
           R +L  GSFV+E+N+     S  E++         D   P T      D  GV P    T
Sbjct: 465 RCQLTFGSFVQEFNSSRNSESAFEESHSSEEVRESDRSSPVTCPEASADGPGVLP---IT 521

Query: 480 SGDYLRIWRAES 515
             D++R+ R++S
Sbjct: 522 IDDHVRVSRSDS 533


>At5g53900.2 68418.m06706 expressed protein similar to unknown
           protein (gb|AAF34833.1)
          Length = 377

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 222 HET*RNIQIPSPWPLYSMNWSVRPDKRFRLALGSFVEEYNNKVQII 359
           HE  R++   S W +YS+ W++RP  R R   G  + + +  + ++
Sbjct: 22  HEALRSVCFNSDW-IYSVFWTIRPRPRVRGGNGCKIGDESGSLMLM 66


>At5g16700.1 68418.m01955 glycosyl hydrolase family 5 protein /
           cellulase family protein cellulase (EC 3.2.1.4)
           precursor - Xanthomonas campestris pv. campestris,
           PIR:JH0158
          Length = 488

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 467 VWIHPLAIRYPHNLGGRVRVIKGTFCSEL 381
           +WI+ + +  P+ +G +V++  GT CS+L
Sbjct: 405 LWINKMCVEAPNVVGQKVKLGVGTKCSKL 433


>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           damage-specific DNA binding protein 2 (GI:10798819)
           [Homo sapiens]
          Length = 557

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 540 RTHSNNVYGSPHAICVDNHR*LPTSLD 460
           + +  NVYG+ H++ V+N R  PT+ D
Sbjct: 203 KVYEKNVYGNIHSVQVNNMRFSPTNDD 229


>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
           (incomplete root hair elongation) [Arabidopsis thaliana]
           gi|6729346|dbj|BAA89783; contains protein kinase domain
           Pfam:PF00069
          Length = 1296

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 551 KNSDFCAPLTSFDW 592
           +NSDFC P  S++W
Sbjct: 252 RNSDFCTPENSYEW 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,515,610
Number of Sequences: 28952
Number of extensions: 287681
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)