Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1436
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   5.5  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   9.5  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 501 SQQSRSGSRSKFNSASQRTSRSVTPKS 581
           S QSRS  RS+    S R+SRS  P S
Sbjct: 139 SHQSRSPVRSRDRDRSSRSSRSRHPSS 165


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 287 DPLLDLDLEGEVICCG 240
           D +LD DL GE+IC G
Sbjct: 272 DRILDEDLIGEIICAG 287


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 568 SPPKVDKRDNRSKSDSPANLEID 636
           S  K+ K DNRS+S +PA+  ++
Sbjct: 144 SVEKLGKEDNRSRSSTPASPSLE 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,409
Number of Sequences: 5004
Number of extensions: 47153
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)