Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1436
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    29   2.4  
02_05_0491 + 29470575-29471351,29471574-29471806,29472697-294728...    28   7.5  
04_04_0821 - 28349662-28350027                                         27   9.9  
01_05_0608 - 23628100-23631486                                         27   9.9  

>11_01_0657 +
           5322295-5323367,5323436-5323555,5323743-5323791,
           5323968-5324084,5324200-5324268,5324394-5324488,
           5325183-5325521,5327043-5327084,5327814-5327907,
           5328121-5328190,5328719-5329677
          Length = 1008

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 483 KRLVKVSQQSRSGSRSKFNSASQRTSRSVTP-KS*QERQQKQVRLP 617
           K L+  S+Q+ SG  +  +S  +RTS  V+P +S Q++ ++Q  +P
Sbjct: 675 KDLIDYSRQNGSGPIASLHSFPRRTSSGVSPHQSQQQQPEEQQSIP 720


>02_05_0491 +
           29470575-29471351,29471574-29471806,29472697-29472856,
           29473149-29473394,29473492-29473628,29473874-29474207,
           29474283-29474444,29474717-29474791,29474866-29474966,
           29475042-29475111,29475210-29475266,29475357-29475418,
           29475505-29475577,29475663-29475884
          Length = 902

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 514 EAVRDLSSIALPKEHLAASPPKVDKRDNRSKSDSPANLEIDEDAT 648
           + V  ++ I  PK  +   PPK ++  N+ K+DS  +   + ++T
Sbjct: 828 DKVSSVNRIPKPKPKIEKKPPKEEESANKEKTDSSESESKEAEST 872


>04_04_0821 - 28349662-28350027
          Length = 121

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 571 PPKVDKRDNRSKSDSPANLEIDEDATS 651
           PPK  K++ +  SD+PA+ E D +  +
Sbjct: 26  PPKKHKKNKKPASDAPADAEADAEGAA 52


>01_05_0608 - 23628100-23631486
          Length = 1128

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 51   LIQNLSKNITQSELYI*LKCISKWMSIQMAGSLDPVVDLWIQKCLMMVPHT 203
            L++N S N TQ   Y   +  S   S+ +  S+  V+ LW   C MM+  T
Sbjct: 1046 LLKNCSTNGTQQSFY---EDRSHMRSLYLGMSIGFVIGLWTVFCTMMMKRT 1093


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,331,345
Number of Sequences: 37544
Number of extensions: 295215
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)