Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1436
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical pr... 29 2.2
U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81088-8|CAB03130.2| 332|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z48009-10|CAA88082.1| 331|Caenorhabditis elegans Hypothetical p... 29 3.8
AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical ... 28 5.0
Z81044-8|CAI79147.2| 165|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z78015-3|CAB01435.1| 448|Caenorhabditis elegans Hypothetical pr... 28 6.7
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 27 8.8
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 27 8.8
>U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical
protein ZK381.5b protein.
Length = 441
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -2
Query: 643 HLHQS-LSWQGSLTCFCCLSC--QLLGV 569
H+ Q L W S CFCC C LLGV
Sbjct: 204 HMSQGDLHWHASAECFCCCVCSKNLLGV 231
>U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical
protein ZK381.5a protein.
Length = 555
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = -2
Query: 643 HLHQS-LSWQGSLTCFCCLSC--QLLGV 569
H+ Q L W S CFCC C LLGV
Sbjct: 318 HMSQGDLHWHASAECFCCCVCSKNLLGV 345
>Z81088-8|CAB03130.2| 332|Caenorhabditis elegans Hypothetical
protein F53F1.8 protein.
Length = 332
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 525 RSKFNSASQRTSRSVTPKS*QERQQKQVR 611
R KFN S S S+TP Q Q+KQ R
Sbjct: 211 RLKFNKKSAIKSNSITPSQHQSNQEKQKR 239
>Z48009-10|CAA88082.1| 331|Caenorhabditis elegans Hypothetical
protein AH6.14 protein.
Length = 331
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -1
Query: 167 QIYYGIETSCHLYRHPFRYTL*SNIQFTLSN 75
QI+YGIE LY+H F + NI T SN
Sbjct: 70 QIFYGIEAITILYKHHFMTSDFCNIMQTESN 100
>AC024843-5|AAK70666.3| 740|Caenorhabditis elegans Hypothetical
protein Y61A9LA.8 protein.
Length = 740
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 487 GSLKSRSNHEAVRDLSSI-ALPKEHLAASPPKVDKRDNRSKSDSPANLEIDED 642
GS RS D+S + ALP + + PK RD S+ + I+ED
Sbjct: 259 GSSSKRSETHHEDDMSDVEALPSKPASTKSPKKSIRDRMSRISKTSEPPIEED 311
>Z81044-8|CAI79147.2| 165|Caenorhabditis elegans Hypothetical
protein C30H6.12 protein.
Length = 165
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 495 KVSQQSRSGSRSKFNSASQRTSRSVTPKS*QERQQKQ 605
K +SRSGS+ + +S ++T+ + T K+ Q+ +K+
Sbjct: 61 KKKSKSRSGSKKRSSSQKKKTTTTTTTKTSQKTAKKK 97
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 484 F*NEPRPAIRSEYDFSHGNYFGI*ISQVIHYE 389
F + R A+R E D + G++ GI I V+H E
Sbjct: 2083 FEHNRRQAVRCEADSTDGSFSGIYIDSVVHEE 2114
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 484 F*NEPRPAIRSEYDFSHGNYFGI*ISQVIHYE 389
F + R A+R E D + G++ GI I V+H E
Sbjct: 2083 FEHNRRQAVRCEADSTDGSFSGIYIDSVVHEE 2114
>Z78015-3|CAB01435.1| 448|Caenorhabditis elegans Hypothetical
protein R02D5.6 protein.
Length = 448
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 616 GSLTCFCCLSCQLLGVTLRDVLWEALLNLDLEPLRDCCETL 494
GS++ FC L+ L +T RD+ + +L L L DCCE L
Sbjct: 38 GSVSIFCSLTTITLYLTNRDLRRKYILYLVL----DCCELL 74
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 453 ERIAGRGSF*KRLVKVSQQSRSGSRSKFNSASQRTSRS 566
E++ GR KRL K S R+ SRS+ S ++ RS
Sbjct: 134 EKMEGRYESEKRLQKESDSKRNRSRSRSRSRDRKRRRS 171
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 453 ERIAGRGSF*KRLVKVSQQSRSGSRSKFNSASQRTSRS 566
E++ GR KRL K S R+ SRS+ S ++ RS
Sbjct: 134 EKMEGRYESEKRLQKESDSKRNRSRSRSRSRDRKRRRS 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,294,439
Number of Sequences: 27780
Number of extensions: 264473
Number of successful extensions: 721
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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