Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1436
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.9  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -1

Query: 281 LLDLDLEGEVICCGTENEILIWIFFLSVWNHHETFLNPQIYYGIET 144
           L+D++L+ +++   T N   +W+     WN ++   NP  Y G++T
Sbjct: 57  LIDVNLKNQIM---TTN---VWVE--QEWNDYKLKWNPDDYGGVDT 94


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 495 KVSQQSRSGSRSKFNSA 545
           K+  + RSG +SKFN+A
Sbjct: 364 KMHGRGRSGKKSKFNAA 380


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 281 LLDLDLEGEVICCGTENEILIWIFFLSVWNHHETFLNPQIYYGIE 147
           L++++L+ +V+   T N   +W+     WN ++   NP+ Y G+E
Sbjct: 70  LIEMNLKNQVM---TTN---VWVE--QRWNDYKLKWNPEEYGGVE 106


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 649 WLHLHQSLSWQGSLTCFCC 593
           +L +  S  WQ   +C CC
Sbjct: 60  YLQVSGSKIWQMERSCMCC 78


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +3

Query: 195 PHTQEKNPDQNLVLGPAAYHFSLQVQ 272
           PH Q  N      +GP  +H   Q Q
Sbjct: 334 PHHQHGNHTMGPTMGPPHHHHHHQTQ 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,951
Number of Sequences: 438
Number of extensions: 3375
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)